Wall clock time and date at job start Mon Mar 30 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81399 * 109.47392 * 2 1 4 4 O 1.42103 * 109.47106 * 70.93830 * 3 2 1 5 5 N 1.65593 * 103.00271 * 179.97438 * 3 2 1 6 6 C 1.39779 * 120.00220 * 179.97438 * 5 3 2 7 7 C 1.38947 * 120.00792 * 314.73342 * 6 5 3 8 8 C 1.38014 * 119.99273 * 179.72054 * 7 6 5 9 9 C 1.38901 * 120.00668 * 0.54599 * 8 7 6 10 10 O 1.35800 * 119.99375 * 179.70365 * 9 8 7 11 11 C 1.34811 * 116.99787 * 174.48138 * 10 9 8 12 12 H 1.08003 * 119.99908 * 5.05477 * 11 10 9 13 13 C 1.38619 * 119.99561 * 185.05930 * 11 10 9 14 14 N 1.31573 * 120.00321 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99558 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47260 * 60.00012 * 15 13 11 17 17 H 1.48504 * 109.46827 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46900 * 299.99633 * 15 13 11 19 19 C 1.38896 * 120.01007 * 359.72602 * 9 8 7 20 20 C 1.38014 * 120.00915 * 0.02562 * 19 9 8 21 21 H 1.08999 * 109.47486 * 300.00268 * 1 2 3 22 22 H 1.09008 * 109.46915 * 60.00059 * 1 2 3 23 23 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46420 * 119.99935 * 2 1 3 25 25 H 1.08999 * 109.47486 * 239.99732 * 2 1 3 26 26 H 0.97002 * 119.99716 * 359.97438 * 5 3 2 27 27 H 1.07997 * 119.99965 * 359.97438 * 7 6 5 28 28 H 1.07996 * 119.99575 * 180.25289 * 8 7 6 29 29 H 0.97000 * 120.00393 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.99611 * 179.97438 * 19 9 8 31 31 H 1.07994 * 120.00452 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8801 2.3027 1.2663 5 7 3.7801 1.5236 0.0007 6 6 4.6110 2.6476 0.0004 7 6 4.3435 3.7093 -0.8551 8 6 5.1607 4.8214 -0.8511 9 6 6.2572 4.8746 -0.0001 10 8 7.0647 5.9665 -0.0007 11 6 8.0423 6.0051 0.9268 12 1 8.2075 5.1557 1.5730 13 6 8.8353 7.1353 1.0511 14 7 8.6343 8.1700 0.2636 15 14 10.1904 7.1886 2.3358 16 1 11.1616 6.0955 2.0765 17 1 10.8884 8.4975 2.2649 18 1 9.5988 7.0151 3.6867 19 6 6.5282 3.8110 0.8511 20 6 5.7083 2.7008 0.8513 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8932 -0.5139 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.1673 0.6342 0.0014 27 1 3.4937 3.6659 -1.5202 28 1 4.9505 5.6484 -1.5131 29 1 9.1889 8.9609 0.3508 30 1 7.3810 3.8525 1.5125 31 1 5.9193 1.8737 1.5128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395352099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:59 Heat of formation + Delta-G solvation = -40.780521 kcal Electronic energy + Delta-G solvation = -16003.546183 eV Core-core repulsion = 13184.386950 eV Total energy + Delta-G solvation = -2819.159233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06820 -36.93544 -35.48571 -33.48695 -32.90373 -32.08001 -30.25578 -27.42924 -25.24417 -23.72220 -22.13911 -21.09737 -18.42205 -17.85864 -17.20545 -16.70243 -15.98123 -15.12423 -14.66776 -14.51283 -14.27279 -13.77485 -13.57223 -13.02202 -12.95605 -12.74958 -12.45806 -12.25957 -11.76732 -11.67727 -11.52390 -11.39255 -11.02448 -10.76141 -10.46902 -10.33621 -9.78909 -9.30398 -8.74474 -8.26976 -8.06078 -6.92063 -6.43203 -4.01246 1.70326 2.12750 2.41387 2.61867 3.14405 3.16100 3.18459 3.98393 4.05439 4.53567 4.76511 4.83450 5.09401 5.16426 5.27083 5.54708 5.57656 5.61173 5.69500 5.76097 5.86136 6.13082 6.34082 6.60906 6.75574 6.96534 7.11514 7.29519 7.41255 7.48096 7.86501 8.01158 9.02318 9.71816 10.74722 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.004080 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.889023 B = 6861.424961 C = 7059.123426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.497 4.497 3 S 1.491 4.509 4 O -0.887 6.887 5 N -0.956 5.956 6 C 0.076 3.924 7 C -0.106 4.106 8 C -0.168 4.168 9 C 0.141 3.859 10 O -0.177 6.177 11 C -0.392 4.392 12 H 0.091 0.909 13 C 0.040 3.960 14 N -0.863 5.863 15 Si 0.940 3.060 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.270 1.270 19 C -0.212 4.212 20 C -0.091 4.091 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.392 0.608 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.270 0.730 30 H 0.130 0.870 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 -13.602 -4.879 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.632 4.632 3 S 1.592 4.408 4 O -0.871 6.871 5 N -0.699 5.699 6 C -0.020 4.020 7 C -0.128 4.128 8 C -0.188 4.188 9 C 0.087 3.913 10 O -0.081 6.081 11 C -0.468 4.468 12 H 0.108 0.892 13 C -0.164 4.164 14 N -0.498 5.498 15 Si 0.765 3.235 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.232 4.232 20 C -0.114 4.114 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.222 0.778 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.584 -12.167 -4.958 17.516 hybrid contribution 1.538 -1.777 2.552 3.470 sum -10.046 -13.944 -2.405 17.354 Atomic orbital electron populations 1.21266 0.92171 1.02821 1.02489 1.28149 1.04133 1.24008 1.06907 1.70620 0.78351 0.84470 1.07314 1.93029 1.79408 1.67563 1.47053 1.50354 1.20037 1.09992 1.89558 1.16902 0.95476 0.89477 1.00152 1.20524 1.00232 0.93920 0.98119 1.20045 0.95798 0.99428 1.03508 1.19361 0.90352 0.87874 0.93688 1.83985 1.38618 1.34963 1.50495 1.21258 1.09427 1.02510 1.13638 0.89199 1.25261 0.98657 0.94336 0.98193 1.70030 1.38600 1.04547 1.36620 0.85796 0.79785 0.78031 0.79909 1.19534 1.20265 1.19530 1.21075 1.03142 0.94581 1.04434 1.20748 0.95832 0.97750 0.97020 0.92416 0.91327 0.91998 0.90096 0.87002 0.77813 0.86404 0.85786 0.91976 0.85279 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.92 37.16 0.37 -0.64 16 2 C -0.50 -4.35 6.70 37.16 0.25 -4.10 16 3 S 1.49 17.24 13.12 -107.50 -1.41 15.83 16 4 O -0.89 -17.00 17.96 -35.23 -0.63 -17.63 16 5 N -0.96 -12.92 5.67 32.45 0.18 -12.74 16 6 C 0.08 1.34 6.21 -83.71 -0.52 0.82 16 7 C -0.11 -1.84 9.40 -39.40 -0.37 -2.21 16 8 C -0.17 -3.46 9.98 -39.42 -0.39 -3.85 16 9 C 0.14 3.41 6.65 -39.09 -0.26 3.15 16 10 O -0.18 -5.04 9.76 -0.05 0.00 -5.04 16 11 C -0.39 -11.01 9.48 30.87 0.29 -10.72 16 12 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 13 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 14 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 15 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 C -0.21 -4.71 9.16 -39.42 -0.36 -5.07 16 20 C -0.09 -1.78 9.96 -39.40 -0.39 -2.17 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.11 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.39 4.37 8.76 -34.46 -0.30 4.07 16 27 H 0.12 1.50 7.70 -52.49 -0.40 1.09 16 28 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.86 5.63 -52.48 -0.30 2.56 16 31 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -36.76 286.43 -6.66 -43.41 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.37 Total: 4.55 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.48 Total: -23.79 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.94 Total: -37.30 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.63 Total: -22.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 17.24 SS G_CDS: -1.41 Total: 15.83 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.76 -6.66 -43.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395352099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.634 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds