Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81399 * 109.47392 * 2 1 4 4 O 1.42103 * 109.47106 * 70.93830 * 3 2 1 5 5 N 1.65593 * 103.00271 * 179.97438 * 3 2 1 6 6 C 1.39779 * 120.00220 * 179.97438 * 5 3 2 7 7 C 1.38947 * 120.00792 * 314.73342 * 6 5 3 8 8 C 1.38014 * 119.99273 * 179.72054 * 7 6 5 9 9 C 1.38901 * 120.00668 * 0.54599 * 8 7 6 10 10 O 1.35800 * 119.99375 * 179.70365 * 9 8 7 11 11 C 1.34811 * 116.99787 * 174.48138 * 10 9 8 12 12 H 1.08003 * 119.99908 * 5.05477 * 11 10 9 13 13 C 1.38619 * 119.99561 * 185.05930 * 11 10 9 14 14 N 1.31573 * 120.00321 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99558 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47260 * 60.00012 * 15 13 11 17 17 H 1.48504 * 109.46827 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46900 * 299.99633 * 15 13 11 19 19 C 1.38896 * 120.01007 * 359.72602 * 9 8 7 20 20 C 1.38014 * 120.00915 * 0.02562 * 19 9 8 21 21 H 1.08999 * 109.47486 * 300.00268 * 1 2 3 22 22 H 1.09008 * 109.46915 * 60.00059 * 1 2 3 23 23 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46420 * 119.99935 * 2 1 3 25 25 H 1.08999 * 109.47486 * 239.99732 * 2 1 3 26 26 H 0.97002 * 119.99716 * 359.97438 * 5 3 2 27 27 H 1.07997 * 119.99965 * 359.97438 * 7 6 5 28 28 H 1.07996 * 119.99575 * 180.25289 * 8 7 6 29 29 H 0.97000 * 120.00393 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.99611 * 179.97438 * 19 9 8 31 31 H 1.07994 * 120.00452 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8801 2.3027 1.2663 5 7 3.7801 1.5236 0.0007 6 6 4.6110 2.6476 0.0004 7 6 4.3435 3.7093 -0.8551 8 6 5.1607 4.8214 -0.8511 9 6 6.2572 4.8746 -0.0001 10 8 7.0647 5.9665 -0.0007 11 6 8.0423 6.0051 0.9268 12 1 8.2075 5.1557 1.5730 13 6 8.8353 7.1353 1.0511 14 7 8.6343 8.1700 0.2636 15 14 10.1904 7.1886 2.3358 16 1 11.1616 6.0955 2.0765 17 1 10.8884 8.4975 2.2649 18 1 9.5988 7.0151 3.6867 19 6 6.5282 3.8110 0.8511 20 6 5.7083 2.7008 0.8513 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8932 -0.5139 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.1673 0.6342 0.0014 27 1 3.4937 3.6659 -1.5202 28 1 4.9505 5.6484 -1.5131 29 1 9.1889 8.9609 0.3508 30 1 7.3810 3.8525 1.5125 31 1 5.9193 1.8737 1.5128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395352099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = -68.879929 kcal Electronic energy + Delta-G solvation = -16004.764665 eV Core-core repulsion = 13184.386950 eV Total energy + Delta-G solvation = -2820.377715 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77941 -38.63040 -36.75805 -35.01770 -34.00259 -33.59059 -31.86651 -29.01845 -27.19760 -24.52003 -23.76811 -22.66113 -20.02535 -19.31980 -18.82040 -18.06312 -17.27902 -16.36998 -16.23394 -15.83303 -15.51561 -15.46349 -15.23493 -14.60833 -14.28372 -14.05692 -13.61391 -13.47164 -13.25250 -13.19513 -12.90930 -12.69312 -12.43023 -12.16164 -12.12124 -11.60897 -11.35526 -10.99094 -10.60675 -9.86093 -9.18840 -8.54290 -8.45107 -6.12093 0.47339 0.52644 1.01296 1.34968 1.45532 1.50770 1.63732 2.18683 2.80355 3.06310 3.16517 3.55342 4.02096 4.06900 4.13242 4.16656 4.29094 4.49733 4.59642 4.74604 4.96677 5.04291 5.06578 5.13596 5.21670 5.26799 5.42546 5.64666 5.70942 6.03350 6.08239 6.46339 6.99343 7.79922 8.77488 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.004080 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.889023 B = 6861.424961 C = 7059.123426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.481 4.481 3 S 1.532 4.468 4 O -0.962 6.962 5 N -0.951 5.951 6 C 0.100 3.900 7 C -0.099 4.099 8 C -0.171 4.171 9 C 0.097 3.903 10 O -0.229 6.229 11 C -0.415 4.415 12 H 0.098 0.902 13 C -0.021 4.021 14 N -0.919 5.919 15 Si 1.016 2.984 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.262 1.262 19 C -0.222 4.222 20 C -0.105 4.105 21 H 0.035 0.965 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.152 0.848 26 H 0.407 0.593 27 H 0.172 0.828 28 H 0.132 0.868 29 H 0.273 0.727 30 H 0.119 0.881 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -16.551 -5.489 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.619 4.619 3 S 1.636 4.364 4 O -0.947 6.947 5 N -0.694 5.694 6 C 0.002 3.998 7 C -0.120 4.120 8 C -0.191 4.191 9 C 0.047 3.953 10 O -0.136 6.136 11 C -0.491 4.491 12 H 0.115 0.885 13 C -0.219 4.219 14 N -0.557 5.557 15 Si 0.835 3.165 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.187 1.187 19 C -0.242 4.242 20 C -0.128 4.128 21 H 0.054 0.946 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.170 0.830 26 H 0.240 0.760 27 H 0.190 0.810 28 H 0.150 0.850 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.171 -15.161 -5.574 20.842 hybrid contribution 1.661 -1.272 2.621 3.354 sum -11.509 -16.433 -2.953 20.279 Atomic orbital electron populations 1.21419 0.91192 1.04094 1.03033 1.27984 1.04894 1.20703 1.08324 1.69764 0.76107 0.85794 1.04727 1.92937 1.80336 1.71280 1.50101 1.50321 1.20468 1.09661 1.88931 1.17120 0.94410 0.90231 0.97992 1.21053 1.00710 0.92155 0.98110 1.20400 0.95100 1.00901 1.02709 1.19934 0.91679 0.87825 0.95894 1.83945 1.40278 1.37320 1.52020 1.21731 1.10008 1.03261 1.14136 0.88488 1.26512 1.01222 0.93612 1.00506 1.70169 1.40671 1.05550 1.39299 0.84695 0.76405 0.78598 0.76805 1.18097 1.19417 1.18660 1.21122 1.03547 0.95295 1.04215 1.21024 0.96241 0.97527 0.97968 0.94607 0.88280 0.90394 0.91400 0.82978 0.76029 0.81048 0.84998 0.91812 0.86316 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.92 71.98 0.71 -0.89 16 2 C -0.48 -6.22 6.70 71.98 0.48 -5.74 16 3 S 1.53 29.97 13.12 -56.49 -0.74 29.23 16 4 O -0.96 -35.23 17.96 -148.98 -2.68 -37.91 16 5 N -0.95 -22.05 5.67 -51.26 -0.29 -22.34 16 6 C 0.10 3.25 6.21 38.22 0.24 3.48 16 7 C -0.10 -3.16 9.40 22.39 0.21 -2.95 16 8 C -0.17 -7.03 9.98 22.38 0.22 -6.81 16 9 C 0.10 4.88 6.65 22.59 0.15 5.03 16 10 O -0.23 -13.83 9.76 -23.10 -0.23 -14.06 16 11 C -0.42 -24.57 9.48 67.91 0.64 -23.93 16 12 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 13 C -0.02 -1.20 5.49 84.82 0.47 -0.74 16 14 N -0.92 -56.66 13.67 21.61 0.30 -56.37 16 15 Si 1.02 43.61 29.55 68.60 2.03 45.63 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 C -0.22 -10.09 9.16 22.37 0.20 -9.88 16 20 C -0.11 -3.98 9.96 22.39 0.22 -3.76 16 21 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 23 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.41 7.27 8.76 -96.75 -0.85 6.42 16 27 H 0.17 3.54 7.70 -2.91 -0.02 3.52 16 28 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 30 H 0.12 5.51 5.63 -2.91 -0.02 5.49 16 31 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -85.88 286.43 2.25 -83.63 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.31 Total: 18.38 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 3.56 Total: -46.19 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: 0.00 Total: -78.71 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -2.90 Total: -51.97 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 29.97 SS G_CDS: -0.74 Total: 29.23 kcal Total: -85.88 2.25 -83.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395352099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.750 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds