Wall clock time and date at job start Mon Mar 30 2020 04:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86808 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47070 * 300.00753 * 3 2 1 6 6 H 1.48498 * 109.46707 * 60.00140 * 3 2 1 7 7 C 1.39588 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99548 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99803 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00070 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 12 17 17 C 1.35133 * 127.25000 * 89.70713 * 16 15 14 18 18 C 1.37811 * 114.76118 * 179.86903 * 17 16 15 19 19 N 1.30078 * 116.88114 * 0.44083 * 18 17 16 20 20 S 1.69604 * 107.15012 * 359.76528 * 19 18 17 21 21 H 0.96996 * 120.00966 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00441 * 359.97438 * 9 7 2 23 23 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 24 24 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 25 25 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 26 26 H 1.08005 * 122.62203 * 0.03677 * 17 16 15 27 27 H 1.08005 * 121.55893 * 180.21071 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7040 1.3466 -0.0006 5 1 1.8851 2.3966 -1.2124 6 1 1.8852 2.3964 1.2125 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2087 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2574 -4.8438 -0.0011 13 8 0.0430 -4.8439 -0.0011 14 7 1.9314 -6.0109 -0.0016 15 6 1.1989 -7.2797 -0.0016 16 6 2.1783 -8.4251 -0.0029 17 6 2.7149 -9.0437 1.0720 18 6 3.5857 -10.0690 0.7729 19 7 3.7950 -10.3141 -0.4873 20 16 2.8544 -9.2156 -1.3734 21 1 -0.4851 0.8399 0.0004 22 1 0.3576 -2.3877 0.0002 23 1 2.9013 -6.0109 -0.0020 24 1 0.5726 -7.3377 0.8886 25 1 0.5719 -7.3373 -0.8914 26 1 2.4776 -8.7587 2.0864 27 1 4.0745 -10.6399 1.5486 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404449999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:44 Heat of formation + Delta-G solvation = -31.382255 kcal Electronic energy + Delta-G solvation = -15597.440857 eV Core-core repulsion = 12675.148820 eV Total energy + Delta-G solvation = -2922.292037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67945 -38.92045 -37.29636 -35.12548 -34.15901 -31.67141 -31.31171 -27.58586 -25.77471 -24.08848 -22.39920 -20.21849 -19.59876 -18.47330 -18.03501 -17.01658 -16.05013 -15.75027 -15.13306 -15.04818 -14.45744 -14.05291 -13.92992 -13.78691 -13.16781 -12.94509 -12.71212 -12.34516 -11.81572 -11.34400 -11.24122 -10.67347 -10.63943 -10.46719 -10.43123 -9.88133 -9.77800 -8.98279 -8.90964 -8.34601 -8.27683 -6.72003 -4.04031 0.38794 1.25357 1.66708 2.21402 2.34602 3.10851 3.13882 3.20387 3.40205 4.02951 4.19937 4.22869 4.76757 4.94096 4.99777 5.12681 5.22407 5.49383 5.59566 5.68262 5.98537 6.33577 6.54614 7.26640 7.57615 7.78013 8.24485 8.51178 8.90564 9.25967 9.79298 10.42709 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.053039 B = 0.003919 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.784892 B = 7142.590834 C = 7371.022991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.114 0.886 9 N -0.497 5.497 10 C 0.393 3.607 11 O -0.597 6.597 12 C 0.516 3.484 13 O -0.543 6.543 14 N -0.713 5.713 15 C 0.197 3.803 16 C -0.187 4.187 17 C -0.187 4.187 18 C 0.087 3.913 19 N -0.461 5.461 20 S 0.276 5.724 21 H 0.281 0.719 22 H 0.405 0.595 23 H 0.412 0.588 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -14.811 1.171 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.436 4.436 8 H 0.132 0.868 9 N -0.131 5.131 10 C 0.177 3.823 11 O -0.485 6.485 12 C 0.301 3.699 13 O -0.420 6.420 14 N -0.369 5.369 15 C 0.071 3.929 16 C -0.317 4.317 17 C -0.223 4.223 18 C -0.110 4.110 19 N -0.282 5.282 20 S 0.428 5.572 21 H 0.091 0.909 22 H 0.240 0.760 23 H 0.249 0.751 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.178 0.822 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.720 -15.348 -0.871 15.611 hybrid contribution -0.159 1.120 1.925 2.232 sum 2.560 -14.228 1.054 14.495 Atomic orbital electron populations 1.69481 1.06541 1.29375 1.45071 1.25607 0.95645 1.00544 0.95822 0.85657 0.79889 0.79913 0.78106 1.18678 1.20241 1.20247 1.19946 0.94043 0.81799 1.47766 0.86849 1.41569 1.10518 1.04209 1.56795 1.18848 0.87787 0.84052 0.91584 1.90592 1.12816 1.86482 1.58642 1.20756 0.87491 0.85673 0.75975 1.90703 1.13975 1.87975 1.49319 1.45697 1.11304 1.03820 1.76103 1.19543 0.90736 0.78445 1.04158 1.25546 1.03985 1.03189 0.99025 1.21452 1.00719 0.98429 1.01701 1.22854 0.97179 0.96989 0.93951 1.76778 1.21711 1.21425 1.08268 1.84238 1.35138 1.23994 1.13862 0.90884 0.75965 0.75140 0.89090 0.89697 0.82194 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.81 13.03 55.53 0.72 -22.09 15 2 C 0.03 0.79 5.51 -17.40 -0.10 0.70 15 3 Si 0.94 19.75 29.56 -169.99 -5.02 14.72 15 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.31 15 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.30 -8.26 9.67 -15.15 -0.15 -8.40 15 8 H 0.11 3.15 7.15 -52.49 -0.38 2.77 15 9 N -0.50 -13.01 5.25 -11.59 -0.06 -13.07 15 10 C 0.39 9.66 7.82 -11.87 -0.09 9.57 15 11 O -0.60 -15.71 16.03 5.37 0.09 -15.63 15 12 C 0.52 10.73 7.87 -11.88 -0.09 10.64 15 13 O -0.54 -12.10 16.47 5.42 0.09 -12.01 15 14 N -0.71 -11.59 5.54 -62.10 -0.34 -11.93 15 15 C 0.20 2.49 6.25 -5.19 -0.03 2.46 15 16 C -0.19 -2.05 5.96 -35.41 -0.21 -2.26 15 17 C -0.19 -1.76 10.17 -40.84 -0.42 -2.17 15 18 C 0.09 0.80 11.27 -18.45 -0.21 0.60 15 19 N -0.46 -5.34 12.09 28.86 0.35 -4.99 15 20 S 0.28 3.06 23.72 -107.50 -2.55 0.51 15 21 H 0.28 6.82 8.30 -40.82 -0.34 6.48 15 22 H 0.40 10.64 7.35 -40.82 -0.30 10.34 15 23 H 0.41 6.56 7.92 -40.82 -0.32 6.23 15 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.16 1.20 8.06 -52.48 -0.42 0.78 15 27 H 0.19 1.07 8.06 -52.48 -0.42 0.64 15 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -30.68 270.64 -5.77 -36.45 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -1.82 Total: 12.83 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.30 Total: 11.12 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.67 Total: -52.08 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.18 Total: -27.64 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.55 Total: 0.51 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.68 -5.77 -36.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404449999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.068 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds