Wall clock time and date at job start Mon Mar 30 2020 04:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48495 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46878 * 300.00049 * 3 2 1 6 6 H 1.48498 * 109.46947 * 59.99850 * 3 2 1 7 7 C 1.37877 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99401 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00055 * 359.97438 * 7 2 1 10 10 O 1.42099 * 102.99952 * 66.15246 * 9 7 2 11 11 C 1.81401 * 102.99927 * 180.02562 * 9 7 2 12 12 C 1.50702 * 109.47222 * 180.02562 * 11 9 7 13 13 C 1.38235 * 119.99834 * 89.99928 * 12 11 9 14 14 C 1.38234 * 119.99692 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.00104 * 0.02562 * 14 13 12 16 16 N 1.48020 * 120.00001 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99894 * 359.97438 * 16 15 14 18 18 O 1.21799 * 119.99903 * 179.72763 * 16 15 14 19 19 C 1.38239 * 119.99659 * 0.25361 * 15 14 13 20 20 C 1.38231 * 119.99991 * 359.46880 * 19 15 14 21 21 H 0.96997 * 120.00470 * 359.97438 * 1 2 3 22 22 H 1.09010 * 109.47242 * 60.00081 * 11 9 7 23 23 H 1.09002 * 109.47345 * 300.00121 * 11 9 7 24 24 H 1.07998 * 119.99910 * 359.97438 * 13 12 11 25 25 H 1.08002 * 120.00159 * 179.97438 * 14 13 12 26 26 H 1.07999 * 119.99627 * 179.73007 * 19 15 14 27 27 H 1.08001 * 119.99546 * 180.27511 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4785 -2.7166 -1.2666 11 6 2.4503 -3.9571 -0.0005 12 6 1.8488 -5.3389 -0.0012 13 6 1.5732 -5.9721 -1.1986 14 6 1.0210 -7.2394 -1.1992 15 6 0.7437 -7.8731 -0.0023 16 7 0.1518 -9.2298 -0.0029 17 8 -0.0914 -9.7876 -1.0580 18 8 -0.0878 -9.7901 1.0517 19 6 1.0139 -7.2373 1.1952 20 6 1.5715 -5.9725 1.1957 21 1 -0.4851 0.8400 0.0004 22 1 3.0665 -3.8291 0.8895 23 1 3.0665 -3.8291 -0.8905 24 1 1.7887 -5.4765 -2.1337 25 1 0.8053 -7.7341 -2.1347 26 1 0.7933 -7.7307 2.1302 27 1 1.7867 -5.4777 2.1313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526857949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:13 Heat of formation + Delta-G solvation = -35.231288 kcal Electronic energy + Delta-G solvation = -15735.446734 eV Core-core repulsion = 12780.695039 eV Total energy + Delta-G solvation = -2954.751695 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02917 -39.34347 -36.43998 -33.94664 -33.20495 -32.91955 -31.28241 -28.33528 -26.07872 -24.78706 -23.04557 -21.55180 -19.20348 -18.54221 -18.24375 -17.40280 -15.75256 -15.62837 -15.40807 -15.25458 -14.59407 -13.93047 -13.78191 -13.23719 -12.82868 -12.60090 -12.02416 -11.61619 -11.51510 -11.39336 -11.26078 -11.05046 -11.04713 -10.97861 -10.73129 -10.41026 -9.60009 -9.29924 -9.16092 -8.40167 -7.11104 -6.55614 -5.03960 -0.01107 1.08532 1.49595 1.56944 2.94991 3.03954 3.10665 3.22442 3.62573 3.97178 4.49531 4.58773 4.63398 4.72927 4.97502 5.09187 5.19375 5.38651 5.47293 5.74372 5.86055 5.96621 6.04524 6.24448 6.39778 6.47968 6.67374 7.28121 7.77812 7.98348 8.88532 10.26882 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.060274 B = 0.004429 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.435184 B = 6320.688678 C = 6388.940180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.119 3.881 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.826 4.826 8 H 0.083 0.917 9 S 1.354 4.646 10 O -0.890 6.890 11 C -0.463 4.463 12 C 0.025 3.975 13 C -0.125 4.125 14 C -0.047 4.047 15 C -0.071 4.071 16 N 0.037 4.963 17 O -0.176 6.176 18 O -0.173 6.173 19 C -0.048 4.048 20 C -0.129 4.129 21 H 0.283 0.717 22 H 0.117 0.883 23 H 0.089 0.911 24 H 0.143 0.857 25 H 0.148 0.852 26 H 0.151 0.849 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -8.785 5.305 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.095 4.095 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.967 4.967 8 H 0.102 0.898 9 S 1.550 4.450 10 O -0.884 6.884 11 C -0.588 4.588 12 C 0.023 3.977 13 C -0.144 4.144 14 C -0.066 4.066 15 C -0.155 4.155 16 N 0.553 4.447 17 O -0.389 6.389 18 O -0.387 6.387 19 C -0.067 4.067 20 C -0.149 4.149 21 H 0.093 0.907 22 H 0.135 0.865 23 H 0.107 0.893 24 H 0.161 0.839 25 H 0.166 0.834 26 H 0.169 0.831 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.412 -8.265 5.265 10.092 hybrid contribution 1.761 1.035 -1.882 2.778 sum 4.173 -7.230 3.383 9.007 Atomic orbital electron populations 1.69879 1.06551 1.29637 1.42410 1.24797 0.94558 1.00191 0.89968 0.86294 0.80442 0.81380 0.78438 1.19017 1.20155 1.19662 1.27445 1.02128 1.05709 1.61462 0.89847 1.69830 0.83309 0.84624 1.07235 1.92835 1.63801 1.85569 1.46222 1.27609 1.18406 1.05747 1.07037 1.19994 0.90539 0.94344 0.92780 1.21195 1.00237 0.93476 0.99512 1.20972 0.94169 0.94550 0.96925 1.21012 1.12265 0.84957 0.97287 1.43650 0.98022 1.02820 1.00183 1.94513 1.56573 1.67041 1.20792 1.94496 1.56525 1.66819 1.20852 1.21001 0.94322 0.94653 0.96750 1.21166 1.00831 0.93710 0.99146 0.90690 0.86499 0.89267 0.83918 0.83414 0.83107 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.84 13.15 55.43 0.73 -22.11 15 2 C 0.12 3.06 5.46 -17.82 -0.10 2.97 15 3 Si 0.91 19.45 29.54 -169.99 -5.02 14.42 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.83 -20.65 9.38 30.60 0.29 -20.36 15 8 H 0.08 2.00 7.81 -52.49 -0.41 1.59 15 9 S 1.35 29.44 12.96 -107.50 -1.39 28.05 15 10 O -0.89 -25.00 17.82 -35.23 -0.63 -25.63 15 11 C -0.46 -7.68 6.01 36.01 0.22 -7.47 15 12 C 0.03 0.38 5.14 -104.62 -0.54 -0.16 15 13 C -0.12 -1.89 9.70 -39.58 -0.38 -2.28 15 14 C -0.05 -0.66 9.56 -39.58 -0.38 -1.04 15 15 C -0.07 -1.02 6.85 -79.94 -0.55 -1.57 15 16 N 0.04 0.58 4.45 33.96 0.15 0.73 15 17 O -0.18 -2.86 18.45 -29.46 -0.54 -3.41 15 18 O -0.17 -2.70 18.45 -29.46 -0.54 -3.25 15 19 C -0.05 -0.59 9.56 -39.58 -0.38 -0.97 15 20 C -0.13 -1.56 9.70 -39.59 -0.38 -1.95 15 21 H 0.28 6.97 8.31 -40.82 -0.34 6.63 15 22 H 0.12 1.60 8.09 -51.92 -0.42 1.18 15 23 H 0.09 1.59 8.08 -51.92 -0.42 1.17 15 24 H 0.14 2.18 8.06 -52.49 -0.42 1.76 15 25 H 0.15 1.86 7.61 -52.49 -0.40 1.46 15 26 H 0.15 1.51 7.61 -52.49 -0.40 1.11 15 27 H 0.15 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -32.59 271.14 -7.40 -39.98 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -2.03 Total: -0.06 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -2.20 Total: -32.82 kcal Atomic # 7 Polarization: -22.25 SS G_CDS: 0.88 Total: -21.37 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.71 Total: -32.28 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -1.39 Total: 28.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.59 -7.40 -39.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526857949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.752 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds