Wall clock time and date at job start Mon Mar 30 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39401 * 120.49153 * 278.61626 * 3 2 1 5 5 C 1.38467 * 120.03320 * 179.76749 * 4 3 2 6 6 O 1.35750 * 119.45010 * 180.27276 * 5 4 3 7 7 C 1.39939 * 121.09918 * 0.51502 * 5 4 3 8 8 O 1.35847 * 119.48937 * 179.75905 * 7 5 4 9 9 C 1.42900 * 117.00113 * 179.72929 * 8 7 5 10 10 F 1.39898 * 109.47012 * 59.99524 * 9 8 7 11 11 F 1.39899 * 109.46839 * 299.99844 * 9 8 7 12 12 C 1.37666 * 121.01825 * 359.48033 * 7 5 4 13 13 C 1.40827 * 119.87864 * 0.25592 * 12 7 5 14 14 C 1.40616 * 120.52422 * 180.02562 * 13 12 7 15 15 H 1.08006 * 120.00341 * 149.04107 * 14 13 12 16 16 C 1.40186 * 119.99834 * 329.04231 * 14 13 12 17 17 N 1.30706 * 120.00377 * 167.27229 * 16 14 13 18 18 Si 1.86807 * 120.00093 * 347.26777 * 16 14 13 19 19 H 1.48501 * 109.46994 * 95.52200 * 18 16 14 20 20 H 1.48499 * 109.47294 * 215.52611 * 18 16 14 21 21 H 1.48508 * 109.46687 * 335.52844 * 18 16 14 22 22 H 1.08003 * 119.98515 * 359.97438 * 4 3 2 23 23 H 0.96693 * 114.00375 * 270.23770 * 6 5 4 24 24 H 1.08996 * 109.47307 * 179.97438 * 9 8 7 25 25 H 1.08000 * 120.05325 * 180.23231 * 12 7 5 26 26 H 0.97003 * 120.00225 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2755 -0.1790 1.1877 5 6 4.6601 -0.1815 1.1760 6 8 5.3370 -0.3630 2.3386 7 6 5.3733 0.0049 -0.0135 8 8 6.7314 0.0013 0.0135 9 6 7.4056 0.1904 -1.2322 10 9 7.0436 1.4279 -1.7752 11 9 7.0446 -0.8309 -2.1175 12 6 4.7197 0.1862 -1.2115 13 6 3.3119 0.1908 -1.2490 14 6 2.6305 0.3742 -2.4652 15 1 1.6675 -0.0897 -2.6201 16 6 3.2010 1.1593 -3.4768 17 7 2.7021 1.1326 -4.6846 18 14 4.6743 2.2437 -3.0987 19 1 5.9232 1.5246 -3.4570 20 1 4.5814 3.4981 -3.8881 21 1 4.6896 2.5705 -1.6501 22 1 2.7433 -0.3196 2.1169 23 1 5.5327 0.4571 2.8120 24 1 8.4831 0.1667 -1.0695 25 1 5.2857 0.3249 -2.1208 26 1 3.0967 1.6762 -5.3845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575638867.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:14 Heat of formation + Delta-G solvation = -156.970636 kcal Electronic energy + Delta-G solvation = -18879.085524 eV Core-core repulsion = 15365.214428 eV Total energy + Delta-G solvation = -3513.871096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.36239 -48.32060 -40.95485 -38.69969 -37.90426 -36.79168 -35.37329 -32.03316 -31.23263 -27.40574 -26.95941 -24.01689 -23.36018 -20.39363 -20.22889 -19.51352 -18.96791 -18.63879 -17.79342 -16.98559 -16.79150 -16.19394 -15.96164 -15.26686 -15.07705 -14.82581 -14.66546 -14.51278 -14.45744 -14.22029 -14.15579 -13.74764 -13.50791 -13.26327 -12.97084 -12.34025 -12.23832 -11.97108 -11.75353 -11.39757 -11.00762 -9.72914 -9.21291 -9.11493 -6.81007 0.03523 0.52485 1.25429 1.33077 1.44718 1.70090 1.91754 1.97323 2.03609 2.49857 2.65591 3.19033 3.31226 3.59733 3.69409 3.74231 4.02884 4.32499 4.47812 4.63203 4.95982 5.17207 5.27955 5.49443 5.62475 5.85626 6.02392 6.29846 6.42746 6.82193 7.16505 7.88603 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.014097 C = 0.008222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.854013 B = 1985.785710 C = 3404.672771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.305 3.695 3 C -0.183 4.183 4 C 0.002 3.998 5 C -0.033 4.033 6 O -0.486 6.486 7 C 0.153 3.847 8 O -0.315 6.315 9 C 0.393 3.607 10 F -0.212 7.212 11 F -0.213 7.213 12 C -0.309 4.309 13 C 0.136 3.864 14 C -0.442 4.442 15 H 0.063 0.937 16 C 0.044 3.956 17 N -0.813 5.813 18 Si 0.968 3.032 19 H -0.239 1.239 20 H -0.281 1.281 21 H -0.245 1.245 22 H 0.154 0.846 23 H 0.389 0.611 24 H 0.245 0.755 25 H 0.125 0.875 26 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.424 2.060 6.588 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.005 4.005 3 C -0.189 4.189 4 C -0.019 4.019 5 C -0.079 4.079 6 O -0.295 6.295 7 C 0.107 3.893 8 O -0.232 6.232 9 C 0.304 3.696 10 F -0.194 7.194 11 F -0.195 7.195 12 C -0.329 4.329 13 C 0.131 3.869 14 C -0.469 4.469 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.435 5.435 18 Si 0.791 3.209 19 H -0.164 1.164 20 H -0.208 1.208 21 H -0.168 1.168 22 H 0.172 0.828 23 H 0.244 0.756 24 H 0.260 0.740 25 H 0.143 0.857 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.666 1.481 6.252 14.202 hybrid contribution 0.236 0.827 -0.827 1.193 sum 12.902 2.308 5.425 14.185 Atomic orbital electron populations 1.81041 1.13109 1.14883 1.10135 1.25677 0.92634 0.91022 0.91168 1.16824 0.83351 1.24634 0.94103 1.20956 0.92027 0.92396 0.96563 1.16809 0.88399 1.18981 0.83756 1.84852 1.75983 1.35966 1.32697 1.19243 0.80958 0.94621 0.94445 1.86569 1.17689 1.86567 1.32357 1.24521 0.99430 0.71064 0.74581 1.93036 1.93734 1.46075 1.86548 1.93073 1.94109 1.61201 1.71067 1.21098 0.94802 1.20279 0.96682 1.18309 0.90772 0.87085 0.90765 1.19553 1.04955 1.25735 0.96633 0.91894 1.27192 1.00188 0.97083 0.93110 1.69602 1.38888 1.32420 1.02622 0.85777 0.76932 0.77360 0.80871 1.16357 1.20780 1.16837 0.82809 0.75635 0.73978 0.85740 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.56 18.54 19.01 0.35 -24.21 15 2 C 0.30 13.99 14.37 88.33 1.27 15.26 15 3 C -0.18 -7.94 5.94 -19.56 -0.12 -8.06 15 4 C 0.00 0.06 9.67 22.60 0.22 0.28 15 5 C -0.03 -1.16 6.71 22.74 0.15 -1.01 15 6 O -0.49 -14.04 13.21 -75.94 -1.00 -15.05 15 7 C 0.15 5.74 6.49 22.55 0.15 5.89 15 8 O -0.32 -9.70 10.16 -77.02 -0.78 -10.48 15 9 C 0.39 9.90 5.98 113.37 0.68 10.58 15 10 F -0.21 -6.44 11.54 44.97 0.52 -5.92 15 11 F -0.21 -6.68 15.55 44.97 0.70 -5.98 15 12 C -0.31 -13.28 5.24 22.77 0.12 -13.16 15 13 C 0.14 6.49 5.29 -19.88 -0.11 6.38 15 14 C -0.44 -23.47 9.03 23.32 0.21 -23.26 15 15 H 0.06 3.71 7.67 -2.91 -0.02 3.68 15 16 C 0.04 2.24 5.47 85.33 0.47 2.70 15 17 N -0.81 -41.96 13.92 21.87 0.30 -41.65 15 18 Si 0.97 40.18 22.18 68.60 1.52 41.71 15 19 H -0.24 -9.17 5.39 99.48 0.54 -8.64 15 20 H -0.28 -11.07 7.11 99.48 0.71 -10.36 15 21 H -0.24 -10.23 6.52 99.48 0.65 -9.58 15 22 H 0.15 4.52 8.06 -2.91 -0.02 4.49 15 23 H 0.39 7.41 9.06 -74.06 -0.67 6.74 15 24 H 0.24 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.13 5.35 2.06 -2.91 -0.01 5.35 15 26 H 0.30 13.92 8.29 -92.71 -0.77 13.15 15 Total: -1.00 -63.62 241.59 5.03 -58.59 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.38 Total: 7.39 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.04 Total: -4.40 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 0.66 Total: -65.86 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -1.79 Total: -25.53 kcal Atomic # 9 Polarization: -13.11 SS G_CDS: 1.22 Total: -11.89 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.52 Total: 41.71 kcal Total: -63.62 5.03 -58.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575638867.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.383 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds