Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40220 * 119.93104 * 169.80492 * 3 2 1 5 5 C 1.38264 * 120.39247 * 180.27897 * 4 3 2 6 6 O 1.36013 * 119.87361 * 179.72882 * 5 4 3 7 7 C 1.39063 * 120.24624 * 359.45138 * 5 4 3 8 8 O 1.35609 * 120.06687 * 180.29709 * 7 5 4 9 9 C 1.42902 * 117.00283 * 89.99696 * 8 7 5 10 10 F 1.39901 * 109.46948 * 300.00792 * 9 8 7 11 11 F 1.39904 * 109.46657 * 60.00082 * 9 8 7 12 12 C 1.41262 * 119.86613 * 0.27329 * 7 5 4 13 13 C 1.41243 * 120.19350 * 179.97438 * 12 7 5 14 14 H 1.08000 * 120.00028 * 334.41610 * 13 12 7 15 15 C 1.39903 * 119.99868 * 154.40960 * 13 12 7 16 16 N 1.30872 * 119.99999 * 343.15492 * 15 13 12 17 17 Si 1.86801 * 119.99936 * 163.15128 * 15 13 12 18 18 H 1.48507 * 109.47069 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47002 * 120.00148 * 17 15 13 20 20 H 1.48492 * 109.47589 * 240.00223 * 17 15 13 21 21 C 1.38983 * 119.93656 * 349.53789 * 3 2 1 22 22 H 1.08010 * 119.80820 * 0.02562 * 4 3 2 23 23 H 0.96704 * 113.99488 * 269.72207 * 6 5 4 24 24 H 1.08993 * 109.47743 * 180.02562 * 9 8 7 25 25 H 0.97007 * 119.99736 * 179.97438 * 16 15 13 26 26 H 1.07998 * 120.12807 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2672 1.1970 -0.2151 5 6 4.6497 1.2075 -0.2228 6 8 5.3171 2.3729 -0.4379 7 6 5.3604 0.0321 -0.0056 8 8 6.7164 0.0477 -0.0080 9 6 7.3647 0.2863 1.2430 10 9 6.9751 1.5349 1.7395 11 9 7.0018 -0.7116 2.1539 12 6 4.6670 -1.1781 0.2179 13 6 5.3819 -2.3761 0.4386 14 1 6.3826 -2.4876 0.0481 15 6 4.7937 -3.4183 1.1633 16 7 3.7437 -3.1856 1.9090 17 14 5.5068 -5.1421 1.0662 18 1 6.6846 -5.1403 0.1616 19 1 5.9250 -5.5818 2.4216 20 1 4.4785 -6.0744 0.5388 21 6 3.2622 -1.1834 0.2187 22 1 2.7224 2.1150 -0.3798 23 1 5.5102 2.5495 -1.3689 24 1 8.4452 0.2733 1.1007 25 1 3.3356 -3.9083 2.4112 26 1 2.7236 -2.1041 0.3882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575640151.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -148.776703 kcal Electronic energy + Delta-G solvation = -18752.812621 eV Core-core repulsion = 15239.296841 eV Total energy + Delta-G solvation = -3513.515780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.08617 -46.21322 -39.04583 -36.64449 -36.35650 -35.29058 -33.62249 -30.07830 -28.59536 -25.90492 -24.92972 -22.07081 -21.55561 -18.97526 -17.87516 -17.26219 -16.85197 -16.62881 -16.13895 -15.48086 -14.80918 -14.72018 -13.93272 -13.22083 -13.06068 -13.00808 -12.86840 -12.58982 -12.35712 -12.28301 -12.14948 -11.81000 -11.54542 -11.36604 -11.20073 -10.87454 -10.55870 -10.38866 -10.31494 -9.50892 -9.29693 -7.83610 -7.59702 -7.13523 -4.72377 1.67833 2.40335 2.89055 2.93577 2.99405 3.37270 3.48776 3.70614 4.13291 4.37818 4.57539 4.70806 5.14894 5.23245 5.47478 5.67015 6.06237 6.40429 6.55442 6.71883 6.83973 7.05457 7.26997 7.44249 7.60507 7.82703 8.11805 8.21561 8.30915 8.46089 8.66116 9.79321 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.012050 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.568064 B = 2323.136368 C = 3845.554971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.282 3.718 3 C -0.010 4.010 4 C -0.225 4.225 5 C 0.143 3.857 6 O -0.498 6.498 7 C -0.074 4.074 8 O -0.314 6.314 9 C 0.394 3.606 10 F -0.211 7.211 11 F -0.199 7.199 12 C 0.112 3.888 13 C -0.414 4.414 14 H 0.093 0.907 15 C 0.072 3.928 16 N -0.773 5.773 17 Si 0.918 3.082 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.269 1.269 21 C -0.096 4.096 22 H 0.111 0.889 23 H 0.378 0.622 24 H 0.147 0.853 25 H 0.289 0.711 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 1.353 -2.437 7.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.031 4.031 3 C -0.014 4.014 4 C -0.247 4.247 5 C 0.099 3.901 6 O -0.306 6.306 7 C -0.120 4.120 8 O -0.232 6.232 9 C 0.304 3.696 10 F -0.193 7.193 11 F -0.181 7.181 12 C 0.108 3.892 13 C -0.441 4.441 14 H 0.111 0.889 15 C -0.149 4.149 16 N -0.396 5.396 17 Si 0.741 3.259 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.118 4.118 22 H 0.129 0.871 23 H 0.232 0.768 24 H 0.163 0.837 25 H 0.101 0.899 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.959 1.268 -1.747 5.408 hybrid contribution 0.590 -0.670 0.003 0.892 sum 5.548 0.598 -1.744 5.847 Atomic orbital electron populations 1.81082 1.12518 1.09439 1.11239 1.26123 0.93057 0.91897 0.92064 1.15792 0.83045 0.95430 1.07128 1.20294 0.92403 0.96312 1.15716 1.18125 0.89287 0.83383 0.99331 1.84799 1.77467 1.38195 1.30165 1.18780 0.80921 0.91904 1.20376 1.86500 1.18804 1.90185 1.27760 1.23477 0.96324 0.71941 0.77882 1.93040 1.93354 1.44452 1.88487 1.93109 1.93793 1.61972 1.69224 1.17505 0.91144 0.91633 0.88942 1.19652 1.01824 0.96149 1.26472 0.88894 1.26089 0.94155 1.01938 0.92744 1.69788 1.17369 1.35045 1.17413 0.86080 0.80283 0.80105 0.79447 1.17861 1.19554 1.19343 1.21461 0.93931 0.95964 1.00444 0.87087 0.76809 0.83655 0.89931 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.08 18.54 41.84 0.78 -9.30 15 2 C 0.28 5.96 15.31 -22.47 -0.34 5.62 15 3 C -0.01 -0.21 5.73 -106.95 -0.61 -0.83 15 4 C -0.23 -4.62 9.67 -38.83 -0.38 -5.00 15 5 C 0.14 3.00 6.44 -39.27 -0.25 2.75 15 6 O -0.50 -9.13 12.71 -34.65 -0.44 -9.57 15 7 C -0.07 -1.66 5.38 -38.13 -0.20 -1.87 15 8 O -0.31 -6.47 9.41 -33.39 -0.31 -6.78 15 9 C 0.39 7.23 6.35 101.05 0.64 7.88 15 10 F -0.21 -4.22 16.43 2.25 0.04 -4.18 15 11 F -0.20 -4.22 15.80 2.25 0.04 -4.19 15 12 C 0.11 2.65 5.44 -106.76 -0.58 2.06 15 13 C -0.41 -9.68 7.41 -37.82 -0.28 -9.96 15 14 H 0.09 2.13 7.65 -52.49 -0.40 1.73 15 15 C 0.07 1.61 5.15 -17.34 -0.09 1.52 15 16 N -0.77 -17.97 10.97 55.55 0.61 -17.36 15 17 Si 0.92 16.84 29.59 -169.99 -5.03 11.81 15 18 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 21 C -0.10 -2.21 8.37 -38.46 -0.32 -2.53 15 22 H 0.11 2.07 8.06 -52.48 -0.42 1.65 15 23 H 0.38 4.99 9.06 45.56 0.41 5.40 15 24 H 0.15 1.88 8.14 -51.93 -0.42 1.46 15 25 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 26 H 0.14 3.19 6.20 -52.49 -0.33 2.87 15 LS Contribution 257.43 15.07 3.88 3.88 Total: -1.00 -27.25 257.43 -3.16 -30.41 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -0.29 Total: 5.64 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.42 Total: -0.36 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 1.38 Total: -26.66 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.75 Total: -16.35 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.07 Total: -8.37 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.25 -3.16 -30.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640151.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.364 kcal (2) G-P(sol) polarization free energy of solvation -27.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds