Wall clock time and date at job start Mon Mar 30 2020 04:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39197 * 120.52424 * 350.23570 * 3 2 1 5 5 C 1.38881 * 120.12715 * 180.02562 * 4 3 2 6 6 O 1.35707 * 119.37689 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99887 * 180.02562 * 6 5 4 8 8 F 1.39897 * 109.47126 * 299.99441 * 7 6 5 9 9 F 1.39902 * 109.47217 * 60.00185 * 7 6 5 10 10 C 1.39029 * 121.24698 * 359.70766 * 5 4 3 11 11 C 1.37902 * 121.07295 * 0.56110 * 10 5 4 12 12 O 1.35626 * 120.11824 * 179.74412 * 11 10 5 13 13 C 1.41597 * 119.76927 * 359.46511 * 11 10 5 14 14 C 1.40343 * 120.59164 * 180.27632 * 13 11 10 15 15 H 1.08004 * 120.00315 * 218.59506 * 14 13 11 16 16 C 1.40242 * 119.99789 * 38.58552 * 14 13 11 17 17 N 1.30706 * 119.99765 * 20.13336 * 16 14 13 18 18 Si 1.86804 * 120.00166 * 200.12495 * 16 14 13 19 19 H 1.48501 * 109.46978 * 90.00406 * 18 16 14 20 20 H 1.48495 * 109.47060 * 210.00718 * 18 16 14 21 21 H 1.48503 * 109.46986 * 330.00579 * 18 16 14 22 22 H 1.07991 * 119.93406 * 359.97438 * 4 3 2 23 23 H 1.09006 * 109.46581 * 180.02562 * 7 6 5 24 24 H 1.07998 * 119.46555 * 180.28106 * 10 5 4 25 25 H 0.96697 * 114.00344 * 269.72308 * 12 11 10 26 26 H 0.97008 * 119.99856 * 183.94241 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2754 -1.1807 0.2034 5 6 4.6642 -1.1705 0.2023 6 8 5.3386 -2.3312 0.4015 7 6 6.7659 -2.2622 0.3909 8 9 7.2004 -1.7832 -0.8496 9 9 7.1985 -1.3977 1.4022 10 6 5.3766 0.0051 -0.0056 11 6 4.7271 1.2049 -0.2067 12 8 5.4414 2.3410 -0.4025 13 6 3.3117 1.2455 -0.2139 14 6 2.6330 2.4560 -0.4227 15 1 1.7318 2.6725 0.1318 16 6 3.1250 3.3846 -1.3514 17 7 3.9504 2.9975 -2.2880 18 14 2.6006 5.1746 -1.2499 19 1 3.5457 5.9187 -0.3790 20 1 2.6072 5.7702 -2.6101 21 1 1.2319 5.2579 -0.6797 22 1 2.7434 -2.1068 0.3631 23 1 7.1789 -3.2565 0.5610 24 1 6.4563 -0.0208 -0.0052 25 1 5.6484 2.8206 0.4113 26 1 4.3354 3.6491 -2.8949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575640396.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:37 Heat of formation + Delta-G solvation = -156.491190 kcal Electronic energy + Delta-G solvation = -18483.603990 eV Core-core repulsion = 14969.753685 eV Total energy + Delta-G solvation = -3513.850306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.09190 -48.09414 -40.54470 -38.94394 -37.58451 -35.97498 -35.37122 -31.56218 -30.84916 -27.89010 -25.95186 -24.35730 -22.94039 -20.65961 -19.48068 -19.05767 -18.64712 -18.28561 -17.45116 -17.05236 -16.21235 -15.96797 -15.72578 -15.38421 -14.94737 -14.62803 -14.46348 -14.35145 -14.26305 -14.05860 -13.75162 -13.58264 -13.36448 -13.04993 -12.85385 -12.49992 -12.15437 -11.93553 -11.74328 -11.14270 -10.79966 -9.46496 -9.11654 -8.72383 -6.44498 0.16195 0.80208 1.41083 1.46782 1.52086 1.87386 2.10855 2.17448 2.20147 2.70426 2.78540 3.36215 3.50334 3.69992 3.88553 3.93251 4.19651 4.50735 4.59993 4.99962 5.12003 5.31511 5.43650 5.70290 5.75901 6.15797 6.37352 6.56813 6.71228 6.87525 7.37298 8.21630 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.008080 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.607685 B = 3464.471196 C = 4384.436264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.310 3.690 3 C -0.162 4.162 4 C -0.046 4.046 5 C -0.013 4.013 6 O -0.328 6.328 7 C 0.403 3.597 8 F -0.219 7.219 9 F -0.215 7.215 10 C -0.159 4.159 11 C 0.067 3.933 12 O -0.476 6.476 13 C 0.104 3.896 14 C -0.472 4.472 15 H 0.073 0.927 16 C 0.058 3.942 17 N -0.762 5.762 18 Si 0.972 3.028 19 H -0.250 1.250 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.137 0.863 23 H 0.234 0.766 24 H 0.126 0.874 25 H 0.375 0.625 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -4.507 4.171 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C 0.000 4.000 3 C -0.168 4.168 4 C -0.067 4.067 5 C -0.056 4.056 6 O -0.247 6.247 7 C 0.314 3.686 8 F -0.201 7.201 9 F -0.197 7.197 10 C -0.179 4.179 11 C 0.021 3.979 12 O -0.284 6.284 13 C 0.098 3.902 14 C -0.499 4.499 15 H 0.091 0.909 16 C -0.166 4.166 17 N -0.383 5.383 18 Si 0.793 3.207 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.155 0.845 23 H 0.250 0.750 24 H 0.144 0.856 25 H 0.230 0.770 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.317 -4.767 3.337 9.349 hybrid contribution 0.488 1.249 0.258 1.365 sum 7.806 -3.518 3.595 9.286 Atomic orbital electron populations 1.81010 1.12861 1.10329 1.15087 1.25558 0.92474 0.91001 0.90948 1.16591 0.83401 0.93722 1.23056 1.19903 0.90459 0.96560 0.99739 1.17720 0.90839 0.84243 1.12821 1.86386 1.18718 1.31233 1.88382 1.24203 0.78965 0.94036 0.71420 1.93053 1.89669 1.91140 1.46190 1.93041 1.89688 1.75262 1.61723 1.21488 0.99831 0.92668 1.03881 1.18060 0.88764 0.85982 1.05085 1.84859 1.73105 1.36293 1.34160 1.19007 0.91444 0.91097 0.88662 1.19492 1.09920 1.01256 1.19272 0.90861 1.26492 0.93382 1.04328 0.92383 1.69671 1.20125 1.38806 1.09676 0.85337 0.79610 0.76829 0.78910 1.17371 1.19505 1.19432 0.84512 0.75011 0.85622 0.77047 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.64 18.54 19.00 0.35 -24.29 15 2 C 0.31 14.54 14.49 88.33 1.28 15.82 15 3 C -0.16 -7.41 5.94 -19.63 -0.12 -7.53 15 4 C -0.05 -1.84 9.68 22.65 0.22 -1.62 15 5 C -0.01 -0.52 6.49 22.61 0.15 -0.38 15 6 O -0.33 -10.40 10.40 -90.27 -0.94 -11.34 15 7 C 0.40 9.70 5.97 113.37 0.68 10.37 15 8 F -0.22 -6.48 15.51 44.97 0.70 -5.78 15 9 F -0.22 -5.92 15.55 44.97 0.70 -5.22 15 10 C -0.16 -6.58 8.10 22.38 0.18 -6.40 15 11 C 0.07 3.06 6.18 23.02 0.14 3.20 15 12 O -0.48 -20.55 10.39 -89.39 -0.93 -21.47 15 13 C 0.10 5.06 5.53 -19.76 -0.11 4.95 15 14 C -0.47 -23.50 8.20 23.27 0.19 -23.31 15 15 H 0.07 3.71 7.74 -2.91 -0.02 3.69 15 16 C 0.06 2.68 4.42 85.35 0.38 3.06 15 17 N -0.76 -37.22 11.22 21.88 0.25 -36.97 15 18 Si 0.97 36.00 29.61 68.60 2.03 38.03 15 19 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 20 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 22 H 0.14 4.78 8.06 -2.92 -0.02 4.76 15 23 H 0.23 2.44 8.14 -2.38 -0.02 2.42 15 24 H 0.13 4.90 4.93 -2.91 -0.01 4.89 15 25 H 0.38 12.80 9.06 -74.06 -0.67 12.13 15 26 H 0.30 13.16 8.30 -92.70 -0.77 12.39 15 Total: -1.00 -60.80 253.77 5.75 -55.05 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.60 Total: 13.82 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 2.99 Total: -1.83 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.60 Total: -61.26 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.87 Total: -32.82 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 1.40 Total: -11.00 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -60.80 5.75 -55.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640396.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.437 kcal (2) G-P(sol) polarization free energy of solvation -60.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds