Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.46600 * 120.54569 * 147.06677 * 3 2 1 5 5 C 1.40827 * 120.55725 * 359.97323 * 4 3 2 6 6 H 1.08000 * 120.00076 * 334.76312 * 5 4 3 7 7 C 1.40223 * 119.99674 * 154.76427 * 5 4 3 8 8 N 1.30666 * 119.99896 * 334.72810 * 7 5 4 9 9 Si 1.86799 * 119.99653 * 154.73369 * 7 5 4 10 10 H 1.48503 * 109.46987 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47018 * 299.99399 * 9 7 5 12 12 H 1.48494 * 109.47269 * 59.99796 * 9 7 5 13 13 C 1.40574 * 118.88439 * 180.25058 * 4 3 2 14 14 C 1.38208 * 119.92918 * 359.42473 * 13 4 3 15 15 O 1.35787 * 119.42765 * 180.32290 * 14 13 4 16 16 C 1.38998 * 121.14909 * 0.60573 * 14 13 4 17 17 C 1.38573 * 121.16551 * 359.67456 * 16 14 13 18 18 O 1.35692 * 120.01622 * 180.02562 * 17 16 14 19 19 C 1.42906 * 117.00102 * 0.02562 * 18 17 16 20 20 F 1.39895 * 109.47211 * 300.00492 * 19 18 17 21 21 F 1.39905 * 109.46700 * 60.00479 * 19 18 17 22 22 H 0.96994 * 120.00365 * 354.22299 * 8 7 5 23 23 H 1.07999 * 120.03671 * 179.69572 * 13 4 3 24 24 H 0.96702 * 113.99933 * 270.27938 * 15 14 13 25 25 H 1.07999 * 119.42066 * 179.69723 * 16 14 13 26 26 H 1.08999 * 109.47170 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3126 1.0606 -0.6864 5 6 2.6316 2.0948 -1.3572 6 1 1.6302 1.9309 -1.7269 7 6 3.2538 3.3373 -1.5450 8 7 4.1966 3.7260 -0.7280 9 14 2.7346 4.4369 -2.9630 10 1 3.5386 5.6853 -2.9413 11 1 2.9576 3.7262 -4.2478 12 1 1.2948 4.7736 -2.8269 13 6 4.7177 1.0241 -0.6688 14 6 5.3728 0.0065 -0.0013 15 8 6.7304 -0.0151 0.0148 16 6 4.6661 -0.9983 0.6490 17 6 3.2804 -1.0111 0.6563 18 8 2.6141 -2.0032 1.2989 19 6 3.4047 -3.0015 1.9474 20 9 4.2133 -3.6424 1.0026 21 9 4.2108 -2.3992 2.9194 22 1 4.4085 3.1952 0.0557 23 1 5.2848 1.7929 -1.1726 24 1 7.1247 -0.5019 -0.7219 25 1 5.2064 -1.7828 1.1579 26 1 2.7497 -3.7326 2.4213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = -174.042627 kcal Electronic energy + Delta-G solvation = -18414.764318 eV Core-core repulsion = 14900.152925 eV Total energy + Delta-G solvation = -3514.611393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.25721 -48.25321 -40.88877 -39.27555 -37.91179 -36.88768 -35.22548 -31.36472 -30.74320 -27.70281 -26.91678 -24.10609 -23.12749 -20.91855 -19.98502 -19.13080 -18.95101 -18.84608 -17.86404 -17.07726 -16.30123 -15.91271 -15.76917 -15.49678 -14.97401 -14.86129 -14.84594 -14.60751 -14.20748 -14.11073 -14.02336 -13.85048 -13.34743 -13.01705 -12.74079 -12.43407 -12.11832 -12.00489 -11.86123 -11.32071 -11.05084 -9.74944 -9.56365 -9.21482 -6.84355 0.08804 0.66696 1.50878 1.58003 1.66357 1.81483 1.93913 2.09061 2.23934 2.53503 2.57145 3.15673 3.34679 3.47880 3.62741 3.74221 4.32504 4.39631 4.50826 4.75241 5.08630 5.30378 5.39737 5.56589 5.61127 5.81019 6.06206 6.30372 6.49172 6.83526 6.97280 7.74020 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.007513 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.028757 B = 3726.063776 C = 4529.289791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.309 3.691 3 C -0.230 4.230 4 C 0.141 3.859 5 C -0.490 4.490 6 H 0.079 0.921 7 C 0.011 3.989 8 N -0.768 5.768 9 Si 1.115 2.885 10 H -0.262 1.262 11 H -0.254 1.254 12 H -0.263 1.263 13 C -0.274 4.274 14 C 0.200 3.800 15 O -0.509 6.509 16 C -0.350 4.350 17 C 0.216 3.784 18 O -0.337 6.337 19 C 0.407 3.593 20 F -0.206 7.206 21 F -0.209 7.209 22 H 0.295 0.705 23 H 0.116 0.884 24 H 0.408 0.592 25 H 0.135 0.865 26 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -7.796 0.646 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C 0.000 4.000 3 C -0.237 4.237 4 C 0.135 3.865 5 C -0.516 4.516 6 H 0.097 0.903 7 C -0.212 4.212 8 N -0.388 5.388 9 Si 0.930 3.070 10 H -0.186 1.186 11 H -0.178 1.178 12 H -0.188 1.188 13 C -0.294 4.294 14 C 0.154 3.846 15 O -0.322 6.322 16 C -0.370 4.370 17 C 0.169 3.831 18 O -0.254 6.254 19 C 0.318 3.682 20 F -0.188 7.188 21 F -0.190 7.190 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.267 0.733 25 H 0.153 0.847 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.118 -6.082 0.497 6.459 hybrid contribution 0.603 -1.825 0.643 2.027 sum 2.721 -7.907 1.140 8.439 Atomic orbital electron populations 1.80974 1.12670 1.11928 1.14039 1.25464 0.92452 0.90995 0.91077 1.16303 0.83623 1.05064 1.18730 1.18226 0.91247 0.89807 0.87173 1.20982 1.03294 0.98019 1.29292 0.90285 1.28663 0.91351 0.98456 1.02708 1.70495 1.21244 1.38263 1.08785 0.83026 0.77480 0.74576 0.71920 1.18641 1.17801 1.18779 1.21248 0.93348 1.04051 1.10719 1.17955 0.82379 0.91868 0.92350 1.84646 1.15921 1.78293 1.53378 1.20787 0.91276 1.06499 1.18443 1.18243 0.90274 0.85382 0.89177 1.86551 1.37448 1.35537 1.65864 1.24258 0.82373 0.84713 0.76836 1.93058 1.76591 1.81670 1.67451 1.93071 1.76781 1.85435 1.63763 0.89137 0.86637 0.73271 0.84735 0.74757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.43 18.54 19.00 0.35 -25.07 15 2 C 0.31 15.08 13.85 88.33 1.22 16.31 15 3 C -0.23 -10.98 5.96 -19.41 -0.12 -11.10 15 4 C 0.14 6.93 5.46 -19.89 -0.11 6.82 15 5 C -0.49 -24.13 8.50 23.39 0.20 -23.93 15 6 H 0.08 3.96 7.45 -2.91 -0.02 3.94 15 7 C 0.01 0.49 4.95 85.35 0.42 0.91 15 8 N -0.77 -36.97 12.32 21.87 0.27 -36.70 15 9 Si 1.11 38.49 30.00 68.60 2.06 40.55 15 10 H -0.26 -8.77 7.11 99.48 0.71 -8.07 15 11 H -0.25 -8.16 7.11 99.48 0.71 -7.45 15 12 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 13 C -0.27 -12.59 7.87 22.83 0.18 -12.41 15 14 C 0.20 8.31 6.67 22.45 0.15 8.46 15 15 O -0.51 -17.94 13.46 -91.17 -1.23 -19.16 15 16 C -0.35 -14.15 8.16 22.53 0.18 -13.96 15 17 C 0.22 9.16 6.48 22.79 0.15 9.31 15 18 O -0.34 -12.10 9.87 -90.11 -0.89 -12.99 15 19 C 0.41 10.29 5.98 113.37 0.68 10.97 15 20 F -0.21 -5.67 15.57 44.97 0.70 -4.97 15 21 F -0.21 -6.06 15.57 44.97 0.70 -5.36 15 22 H 0.30 14.88 6.68 -92.71 -0.62 14.26 15 23 H 0.12 5.44 6.50 -2.91 -0.02 5.42 15 24 H 0.41 9.77 9.06 -74.06 -0.67 9.10 15 25 H 0.14 4.99 5.01 -2.91 -0.01 4.97 15 26 H 0.24 2.88 8.14 -2.39 -0.02 2.86 15 Total: -1.00 -61.02 253.38 5.68 -55.34 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.76 Total: 16.99 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 2.96 Total: -8.62 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.62 Total: -61.77 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -2.12 Total: -32.16 kcal Atomic # 9 Polarization: -11.73 SS G_CDS: 1.40 Total: -10.33 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.06 Total: 40.55 kcal Total: -61.02 5.68 -55.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.705 kcal (2) G-P(sol) polarization free energy of solvation -61.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds