Wall clock time and date at job start Mon Mar 30 2020 04:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39067 * 120.05810 * 101.25371 * 3 2 1 5 5 C 1.40490 * 119.75323 * 179.97438 * 4 3 2 6 6 C 1.41267 * 120.07282 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99699 * 204.70645 * 6 5 4 8 8 C 1.39850 * 119.99911 * 24.70505 * 6 5 4 9 9 N 1.30906 * 120.00166 * 17.98739 * 8 6 5 10 10 Si 1.86802 * 120.00047 * 197.98439 * 8 6 5 11 11 H 1.48501 * 109.46568 * 90.00208 * 10 8 6 12 12 H 1.48499 * 109.47230 * 210.00164 * 10 8 6 13 13 H 1.48496 * 109.47270 * 330.00249 * 10 8 6 14 14 C 1.40925 * 119.85508 * 359.76689 * 5 4 3 15 15 C 1.37707 * 120.10856 * 0.48491 * 14 5 4 16 16 O 1.35982 * 119.87468 * 179.77285 * 15 14 5 17 17 C 1.39729 * 120.25228 * 359.49525 * 15 14 5 18 18 O 1.35555 * 119.92734 * 180.25392 * 17 15 14 19 19 C 1.42899 * 117.00007 * 90.00419 * 18 17 15 20 20 F 1.39904 * 109.47192 * 299.99407 * 19 18 17 21 21 F 1.39903 * 109.47561 * 59.99533 * 19 18 17 22 22 H 1.07999 * 120.12396 * 359.94923 * 4 3 2 23 23 H 0.96999 * 120.00112 * 179.97438 * 9 8 6 24 24 H 1.08005 * 119.94584 * 180.25901 * 14 5 4 25 25 H 0.96701 * 113.99855 * 269.71986 * 16 15 14 26 26 H 1.09004 * 109.47171 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2644 0.2358 -1.1805 5 6 4.6693 0.2356 -1.1731 6 6 5.3836 0.4743 -2.3683 7 1 6.3900 0.0987 -2.4800 8 6 4.7874 1.1968 -3.4067 9 7 3.7395 1.9437 -3.1669 10 14 5.4866 1.0960 -5.1360 11 1 4.8338 -0.0180 -5.8696 12 1 5.2320 2.3740 -5.8481 13 1 6.9496 0.8518 -5.0650 14 6 5.3644 0.0020 0.0304 15 6 4.6690 -0.2354 1.1950 16 8 5.3446 -0.4647 2.3526 17 6 3.2717 -0.2357 1.1928 18 8 2.5937 -0.4651 2.3441 19 6 2.2684 0.6740 3.1433 20 9 3.4452 1.3279 3.5241 21 9 1.4669 1.5497 2.4031 22 1 2.7273 0.4177 -2.0997 23 1 3.3262 2.4451 -3.8871 24 1 6.4444 0.0056 0.0386 25 1 5.5404 -1.3975 2.5155 26 1 1.7277 0.3511 4.0330 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575641668.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:42 Heat of formation + Delta-G solvation = -149.812237 kcal Electronic energy + Delta-G solvation = -18564.130075 eV Core-core repulsion = 15050.569391 eV Total energy + Delta-G solvation = -3513.560684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.41615 -46.55144 -39.17888 -36.71152 -36.39450 -35.42389 -33.46693 -30.25106 -28.68360 -26.21818 -24.47843 -22.73964 -21.33827 -19.00009 -18.08911 -17.55853 -17.21154 -16.57266 -16.24075 -15.56717 -14.97573 -14.78071 -13.98810 -13.40337 -13.37505 -13.01869 -12.91186 -12.70218 -12.50410 -12.31946 -11.98875 -11.78488 -11.70261 -11.63312 -11.39650 -10.95628 -10.60936 -10.41827 -10.24799 -9.62874 -9.35217 -7.90526 -7.62607 -7.18799 -4.78336 1.71867 2.23767 2.83463 2.90641 2.93684 3.46073 3.63739 3.68463 3.83729 4.21822 4.46407 4.71923 5.04272 5.13323 5.30696 5.34854 6.21066 6.34267 6.53785 6.70924 6.81393 6.86127 7.37145 7.39478 7.61133 7.74828 8.03362 8.22438 8.33314 8.40804 8.57314 9.74621 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.007409 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.135014 B = 3778.151852 C = 4402.267613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.283 3.717 3 C -0.003 4.003 4 C -0.109 4.109 5 C 0.119 3.881 6 C -0.432 4.432 7 H 0.092 0.908 8 C 0.070 3.930 9 N -0.772 5.772 10 Si 0.919 3.081 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.258 1.258 14 C -0.226 4.226 15 C 0.146 3.854 16 O -0.498 6.498 17 C -0.070 4.070 18 O -0.317 6.317 19 C 0.389 3.611 20 F -0.202 7.202 21 F -0.211 7.211 22 H 0.136 0.864 23 H 0.291 0.709 24 H 0.115 0.885 25 H 0.379 0.621 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -3.050 4.140 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.031 4.031 3 C -0.007 4.007 4 C -0.132 4.132 5 C 0.116 3.884 6 C -0.460 4.460 7 H 0.110 0.890 8 C -0.151 4.151 9 N -0.395 5.395 10 Si 0.742 3.258 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.181 1.181 14 C -0.247 4.247 15 C 0.102 3.898 16 O -0.306 6.306 17 C -0.117 4.117 18 O -0.236 6.236 19 C 0.300 3.700 20 F -0.184 7.184 21 F -0.193 7.193 22 H 0.153 0.847 23 H 0.102 0.898 24 H 0.133 0.867 25 H 0.233 0.767 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.134 -2.371 4.149 4.781 hybrid contribution 0.739 0.013 -0.769 1.066 sum 0.872 -2.358 3.381 4.213 Atomic orbital electron populations 1.81022 1.12382 1.10733 1.09243 1.25845 0.92903 0.92279 0.92031 1.16078 0.83473 1.06097 0.95056 1.21441 0.94494 1.01731 0.95503 1.17399 0.91024 0.88022 0.91987 1.19746 1.01467 1.27676 0.97082 0.89003 1.26106 0.94245 0.92760 1.02019 1.69803 1.17162 1.17157 1.35346 0.86102 0.80656 0.78934 0.80060 1.18791 1.19917 1.18137 1.21241 0.99117 1.13427 0.90924 1.18173 0.87633 0.98757 0.85280 1.84783 1.76475 1.30075 1.39285 1.18166 0.88740 1.21733 0.83069 1.86600 1.74106 1.29346 1.33530 1.23603 0.78041 0.78177 0.90222 1.93070 1.51183 1.82872 1.91292 1.93054 1.74040 1.72187 1.80049 0.84662 0.89756 0.86712 0.76686 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.45 18.54 41.84 0.78 -9.67 15 2 C 0.28 6.42 13.52 -22.47 -0.30 6.12 15 3 C 0.00 -0.06 5.61 -106.82 -0.60 -0.66 15 4 C -0.11 -2.56 8.38 -38.43 -0.32 -2.88 15 5 C 0.12 2.76 5.57 -106.88 -0.60 2.17 15 6 C -0.43 -9.79 9.03 -37.83 -0.34 -10.13 15 7 H 0.09 1.94 7.91 -52.49 -0.41 1.53 15 8 C 0.07 1.53 5.13 -17.34 -0.09 1.44 15 9 N -0.77 -17.79 10.97 55.54 0.61 -17.18 15 10 Si 0.92 16.30 29.60 -169.99 -5.03 11.27 15 11 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 12 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 13 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 14 C -0.23 -4.88 9.69 -38.76 -0.38 -5.26 15 15 C 0.15 3.06 6.44 -39.22 -0.25 2.80 15 16 O -0.50 -9.05 12.71 -34.38 -0.44 -9.48 15 17 C -0.07 -1.53 5.37 -38.17 -0.21 -1.73 15 18 O -0.32 -6.27 9.55 -33.06 -0.32 -6.59 15 19 C 0.39 6.86 6.35 101.05 0.64 7.50 15 20 F -0.20 -3.88 16.43 2.25 0.04 -3.85 15 21 F -0.21 -4.26 15.76 2.25 0.04 -4.23 15 22 H 0.14 3.25 6.16 -52.49 -0.32 2.93 15 23 H 0.29 6.09 8.30 -40.82 -0.34 5.76 15 24 H 0.11 2.29 8.06 -52.48 -0.42 1.87 15 25 H 0.38 4.93 9.06 45.56 0.41 5.35 15 26 H 0.15 1.87 8.14 -51.93 -0.42 1.45 15 LS Contribution 257.59 15.07 3.88 3.88 Total: -1.00 -27.18 257.59 -3.19 -30.37 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -0.30 Total: 6.11 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.44 Total: -0.64 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 1.38 Total: -26.85 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.75 Total: -16.07 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.18 -3.19 -30.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641668.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.442 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds