Wall clock time and date at job start Mon Mar 30 2020 04:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.95266 * 2 1 4 4 C 1.38311 * 120.17513 * 180.02562 * 3 2 1 5 5 C 1.38066 * 120.09188 * 0.25825 * 4 3 2 6 6 C 1.39061 * 119.91111 * 359.49214 * 5 4 3 7 7 N 1.39299 * 120.09037 * 180.27965 * 6 5 4 8 8 C 1.36853 * 119.99507 * 203.27000 * 7 6 5 9 9 H 1.08007 * 119.99731 * 221.37101 * 8 7 6 10 10 C 1.38791 * 120.00352 * 41.38067 * 8 7 6 11 11 N 1.31598 * 119.99869 * 206.07175 * 10 8 7 12 12 Si 1.86799 * 120.00182 * 26.06713 * 10 8 7 13 13 H 1.48501 * 109.46855 * 90.89186 * 12 10 8 14 14 H 1.48499 * 109.47314 * 210.89179 * 12 10 8 15 15 H 1.48497 * 109.47018 * 330.89433 * 12 10 8 16 16 S 1.65596 * 120.00163 * 23.27037 * 7 6 5 17 17 C 1.81402 * 104.44909 * 275.94464 * 16 7 6 18 18 O 1.42092 * 104.27747 * 32.01690 * 16 7 6 19 19 O 1.42097 * 104.27965 * 159.87454 * 16 7 6 20 20 C 1.38028 * 119.95394 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46978 * 89.99767 * 1 2 3 22 22 H 1.08994 * 109.46671 * 209.99709 * 1 2 3 23 23 H 1.08995 * 109.46796 * 330.00134 * 1 2 3 24 24 H 1.08000 * 119.91126 * 0.04359 * 3 2 1 25 25 H 1.07999 * 119.95345 * 179.97438 * 4 3 2 26 26 H 1.08004 * 120.04364 * 179.72037 * 5 4 3 27 27 H 0.96999 * 120.00020 * 179.97438 * 11 10 8 28 28 H 1.09006 * 109.46829 * 53.88719 * 17 16 7 29 29 H 1.08997 * 109.47372 * 173.88099 * 17 16 7 30 30 H 1.08997 * 109.47421 * 293.88648 * 17 16 7 31 31 H 1.08000 * 120.04936 * 359.95344 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1988 0.0000 4 6 3.5809 1.2041 -0.0005 5 6 4.2778 0.0123 -0.0065 6 6 3.5873 -1.1948 -0.0012 7 7 4.2867 -2.3995 -0.0013 8 6 3.6867 -3.5388 -0.4648 9 1 3.8255 -4.4734 0.0586 10 6 2.9001 -3.4935 -1.6073 11 7 1.9412 -4.3777 -1.7815 12 14 3.2025 -2.1772 -2.8978 13 1 4.1676 -2.6848 -3.9059 14 1 1.9214 -1.8362 -3.5668 15 1 3.7591 -0.9642 -2.2467 16 16 5.8439 -2.4529 0.5595 17 6 6.8537 -1.9462 -0.8598 18 8 5.8836 -1.4634 1.5784 19 8 6.0608 -3.8244 0.8614 20 6 2.1962 -1.1959 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6556 2.1328 0.0007 25 1 4.1165 2.1420 -0.0010 26 1 5.3578 0.0174 -0.0114 27 1 1.3912 -4.3458 -2.5799 28 1 6.4951 -0.9885 -1.2373 29 1 7.8937 -1.8477 -0.5490 30 1 6.7788 -2.6976 -1.6458 31 1 1.6563 -2.1313 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586185376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:01 Heat of formation + Delta-G solvation = -34.048650 kcal Electronic energy + Delta-G solvation = -17744.579009 eV Core-core repulsion = 14925.711691 eV Total energy + Delta-G solvation = -2818.867318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.18462 -36.10256 -35.77610 -34.85303 -32.73656 -31.67347 -28.94695 -28.69663 -26.52864 -24.78827 -21.62977 -21.07584 -18.50396 -17.79376 -16.70794 -15.98443 -15.62097 -15.20426 -14.63274 -14.31737 -13.82270 -13.43361 -13.17351 -12.94555 -12.73299 -12.50813 -12.33949 -12.21011 -11.77145 -11.62084 -11.22193 -11.10380 -10.92640 -10.77121 -10.59321 -10.25400 -10.20803 -10.05743 -9.82874 -8.81139 -8.07870 -7.28436 -6.92250 -4.41048 1.17036 2.03399 2.14632 3.01646 3.09126 3.17378 3.58249 3.93418 4.32401 4.50626 4.91162 5.04074 5.38190 5.41620 5.42710 5.63202 5.70289 5.83114 5.97723 6.00014 6.09064 6.28165 6.34873 6.36845 6.67796 6.85802 7.04442 7.14090 7.27182 7.38290 7.71787 8.12100 8.62352 8.66321 10.10739 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.013282 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.850966 B = 2107.580969 C = 2836.233505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 C -0.177 4.177 4 C -0.083 4.083 5 C -0.191 4.191 6 C 0.209 3.791 7 N -0.765 5.765 8 C -0.285 4.285 9 H 0.129 0.871 10 C 0.088 3.912 11 N -0.805 5.805 12 Si 0.842 3.158 13 H -0.271 1.271 14 H -0.270 1.270 15 H -0.230 1.230 16 S 2.487 3.513 17 C -0.701 4.701 18 O -0.982 6.982 19 O -0.962 6.962 20 C -0.150 4.150 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.286 0.714 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 8.038 -1.778 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.102 4.102 5 C -0.213 4.213 6 C 0.109 3.891 7 N -0.573 5.573 8 C -0.430 4.430 9 H 0.146 0.854 10 C -0.131 4.131 11 N -0.438 5.438 12 Si 0.665 3.335 13 H -0.196 1.196 14 H -0.195 1.195 15 H -0.153 1.153 16 S 2.593 3.407 17 C -0.844 4.844 18 O -0.972 6.972 19 O -0.952 6.952 20 C -0.172 4.172 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.292 7.675 -0.928 7.737 hybrid contribution 0.443 0.660 -1.589 1.777 sum 0.735 8.335 -2.517 8.738 Atomic orbital electron populations 1.20737 0.91797 1.02262 1.01807 1.19697 0.95485 0.92863 0.98598 1.20689 0.93960 0.96842 1.08179 1.20638 0.94030 0.96646 0.98859 1.20859 0.99378 0.91876 1.09207 1.17710 0.92376 0.84785 0.94276 1.51662 1.23845 1.10921 1.70872 1.19281 1.25900 0.88825 1.09006 0.85356 1.25725 0.93804 0.96446 0.97117 1.69875 1.13069 1.33850 1.26979 0.87269 0.80102 0.84039 0.82125 1.19626 1.19505 1.15254 1.12282 0.74933 0.74365 0.79110 1.30866 1.16067 1.11638 1.25783 1.93458 1.85712 1.61439 1.56628 1.93435 1.84548 1.33339 1.83872 1.21023 0.92331 0.98634 1.05225 0.91724 0.91508 0.92078 0.87097 0.86666 0.86596 0.90334 0.87029 0.87780 0.86507 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 36.01 0.36 -1.23 16 2 C -0.07 -1.19 5.88 -104.65 -0.62 -1.80 16 3 C -0.18 -2.98 9.70 -39.51 -0.38 -3.36 16 4 C -0.08 -1.46 10.04 -39.62 -0.40 -1.86 16 5 C -0.19 -3.86 7.52 -39.34 -0.30 -4.16 16 6 C 0.21 4.65 3.41 -83.84 -0.29 4.36 16 7 N -0.77 -17.85 2.55 -9.60 -0.02 -17.88 16 8 C -0.29 -7.14 8.60 -15.11 -0.13 -7.27 16 9 H 0.13 3.48 7.60 -52.48 -0.40 3.08 16 10 C 0.09 2.12 3.91 -17.45 -0.07 2.05 16 11 N -0.81 -20.00 13.97 55.49 0.78 -19.22 16 12 Si 0.84 18.29 26.24 -169.99 -4.46 13.83 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.23 -4.86 4.85 56.52 0.27 -4.58 16 16 S 2.49 54.92 5.38 -107.50 -0.58 54.34 16 17 C -0.70 -12.39 10.72 101.05 1.08 -11.31 16 18 O -0.98 -23.11 15.57 -57.54 -0.90 -24.00 16 19 O -0.96 -24.02 16.85 -57.54 -0.97 -24.99 16 20 C -0.15 -3.17 6.84 -39.34 -0.27 -3.44 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 23 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 25 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.12 2.21 4.79 -52.48 -0.25 1.96 16 27 H 0.29 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.11 1.84 6.66 -51.92 -0.35 1.49 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 31 H 0.14 3.19 6.52 -52.49 -0.34 2.85 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -28.67 266.81 -6.69 -35.35 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.55 Total: 6.55 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -1.00 Total: -28.01 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.75 Total: -37.10 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.87 Total: -48.99 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.46 Total: 13.83 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.58 Total: 54.34 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.67 -6.69 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586185376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds