Wall clock time and date at job start Mon Mar 30 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.95266 * 2 1 4 4 C 1.38311 * 120.17513 * 180.02562 * 3 2 1 5 5 C 1.38066 * 120.09188 * 0.25825 * 4 3 2 6 6 C 1.39061 * 119.91111 * 359.49214 * 5 4 3 7 7 N 1.39299 * 120.09037 * 180.27965 * 6 5 4 8 8 C 1.36853 * 119.99507 * 203.27000 * 7 6 5 9 9 H 1.08007 * 119.99731 * 221.37101 * 8 7 6 10 10 C 1.38791 * 120.00352 * 41.38067 * 8 7 6 11 11 N 1.31598 * 119.99869 * 206.07175 * 10 8 7 12 12 Si 1.86799 * 120.00182 * 26.06713 * 10 8 7 13 13 H 1.48501 * 109.46855 * 90.89186 * 12 10 8 14 14 H 1.48499 * 109.47314 * 210.89179 * 12 10 8 15 15 H 1.48497 * 109.47018 * 330.89433 * 12 10 8 16 16 S 1.65596 * 120.00163 * 23.27037 * 7 6 5 17 17 C 1.81402 * 104.44909 * 275.94464 * 16 7 6 18 18 O 1.42092 * 104.27747 * 32.01690 * 16 7 6 19 19 O 1.42097 * 104.27965 * 159.87454 * 16 7 6 20 20 C 1.38028 * 119.95394 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46978 * 89.99767 * 1 2 3 22 22 H 1.08994 * 109.46671 * 209.99709 * 1 2 3 23 23 H 1.08995 * 109.46796 * 330.00134 * 1 2 3 24 24 H 1.08000 * 119.91126 * 0.04359 * 3 2 1 25 25 H 1.07999 * 119.95345 * 179.97438 * 4 3 2 26 26 H 1.08004 * 120.04364 * 179.72037 * 5 4 3 27 27 H 0.96999 * 120.00020 * 179.97438 * 11 10 8 28 28 H 1.09006 * 109.46829 * 53.88719 * 17 16 7 29 29 H 1.08997 * 109.47372 * 173.88099 * 17 16 7 30 30 H 1.08997 * 109.47421 * 293.88648 * 17 16 7 31 31 H 1.08000 * 120.04936 * 359.95344 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1988 0.0000 4 6 3.5809 1.2041 -0.0005 5 6 4.2778 0.0123 -0.0065 6 6 3.5873 -1.1948 -0.0012 7 7 4.2867 -2.3995 -0.0013 8 6 3.6867 -3.5388 -0.4648 9 1 3.8255 -4.4734 0.0586 10 6 2.9001 -3.4935 -1.6073 11 7 1.9412 -4.3777 -1.7815 12 14 3.2025 -2.1772 -2.8978 13 1 4.1676 -2.6848 -3.9059 14 1 1.9214 -1.8362 -3.5668 15 1 3.7591 -0.9642 -2.2467 16 16 5.8439 -2.4529 0.5595 17 6 6.8537 -1.9462 -0.8598 18 8 5.8836 -1.4634 1.5784 19 8 6.0608 -3.8244 0.8614 20 6 2.1962 -1.1959 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6556 2.1328 0.0007 25 1 4.1165 2.1420 -0.0010 26 1 5.3578 0.0174 -0.0114 27 1 1.3912 -4.3458 -2.5799 28 1 6.4951 -0.9885 -1.2373 29 1 7.8937 -1.8477 -0.5490 30 1 6.7788 -2.6976 -1.6458 31 1 1.6563 -2.1313 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586185376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:00 Heat of formation + Delta-G solvation = -54.066125 kcal Electronic energy + Delta-G solvation = -17745.447032 eV Core-core repulsion = 14925.711691 eV Total energy + Delta-G solvation = -2819.735340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68537 -38.02154 -37.35405 -36.79227 -34.39960 -33.10901 -30.46366 -30.26254 -27.92577 -26.46029 -23.17735 -22.51526 -20.29201 -19.47970 -18.44773 -17.64792 -17.26499 -16.85728 -16.37519 -15.87521 -15.32988 -15.01165 -14.72537 -14.46900 -14.18684 -14.00406 -13.78882 -13.64891 -13.34655 -13.06392 -12.99170 -12.93656 -12.68743 -12.45147 -12.03664 -11.95478 -11.72651 -11.70867 -11.46586 -10.55397 -9.52615 -8.85516 -8.67290 -6.27884 -0.55487 0.57457 0.67030 1.31046 1.35054 1.45816 1.83633 2.21401 2.63678 2.90901 3.23251 3.33827 3.99439 4.01739 4.13522 4.18334 4.31019 4.47899 4.61518 4.68061 4.87281 4.89688 4.99151 5.12136 5.20621 5.42771 5.44014 5.66296 5.79680 5.92173 6.10496 6.41111 6.83169 6.92313 8.41748 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.013282 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.850966 B = 2107.580969 C = 2836.233505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C -0.168 4.168 4 C -0.079 4.079 5 C -0.211 4.211 6 C 0.179 3.821 7 N -0.789 5.789 8 C -0.329 4.329 9 H 0.080 0.920 10 C 0.064 3.936 11 N -0.861 5.861 12 Si 0.885 3.115 13 H -0.266 1.266 14 H -0.272 1.272 15 H -0.215 1.215 16 S 2.530 3.470 17 C -0.675 4.675 18 O -0.993 6.993 19 O -0.997 6.997 20 C -0.177 4.177 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.153 0.847 25 H 0.156 0.844 26 H 0.126 0.874 27 H 0.287 0.713 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.131 0.869 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 12.087 -2.474 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.187 4.187 4 C -0.097 4.097 5 C -0.233 4.233 6 C 0.079 3.921 7 N -0.600 5.600 8 C -0.467 4.467 9 H 0.098 0.902 10 C -0.149 4.149 11 N -0.495 5.495 12 Si 0.706 3.294 13 H -0.191 1.191 14 H -0.197 1.197 15 H -0.137 1.137 16 S 2.637 3.363 17 C -0.824 4.824 18 O -0.984 6.984 19 O -0.988 6.988 20 C -0.199 4.199 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.111 0.889 24 H 0.170 0.830 25 H 0.174 0.826 26 H 0.144 0.856 27 H 0.098 0.902 28 H 0.156 0.844 29 H 0.166 0.834 30 H 0.149 0.851 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.878 11.665 -1.618 11.926 hybrid contribution 0.159 -0.386 -1.174 1.246 sum 2.037 11.280 -2.792 11.797 Atomic orbital electron populations 1.20805 0.89571 1.03397 1.02746 1.20141 0.97334 0.92395 0.97189 1.21181 0.94132 0.97671 1.05743 1.21165 0.94578 0.97242 0.96712 1.21139 1.00091 0.91945 1.10143 1.18097 0.92928 0.85183 0.95860 1.51265 1.25230 1.11134 1.72370 1.18608 1.30287 0.87779 1.09999 0.90228 1.26036 0.92852 0.97918 0.98046 1.69951 1.14694 1.36886 1.27927 0.86635 0.79971 0.82764 0.80065 1.19126 1.19720 1.13670 1.08954 0.74851 0.73368 0.79173 1.30559 1.16815 1.13231 1.21844 1.93476 1.86209 1.61371 1.57320 1.93435 1.85179 1.35249 1.84902 1.20961 0.92610 0.98811 1.07562 0.90775 0.92422 0.88934 0.82984 0.82594 0.85626 0.90244 0.84435 0.83381 0.85068 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 10.01 71.24 0.71 -2.24 16 2 C -0.07 -2.41 5.88 -19.88 -0.12 -2.53 16 3 C -0.17 -4.93 9.70 22.32 0.22 -4.72 16 4 C -0.08 -2.40 10.04 22.25 0.22 -2.17 16 5 C -0.21 -7.90 7.52 22.43 0.17 -7.73 16 6 C 0.18 7.86 3.41 38.36 0.13 7.99 16 7 N -0.79 -37.48 2.55 -184.28 -0.47 -37.95 16 8 C -0.33 -17.65 8.60 84.04 0.72 -16.93 16 9 H 0.08 4.83 7.60 -2.91 -0.02 4.81 16 10 C 0.06 3.32 3.91 84.86 0.33 3.65 16 11 N -0.86 -46.38 13.97 21.65 0.30 -46.08 16 12 Si 0.89 38.06 26.24 68.60 1.80 39.86 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.21 -8.60 4.85 99.48 0.48 -8.11 16 16 S 2.53 108.36 5.38 -56.49 -0.30 108.06 16 17 C -0.67 -20.42 10.72 113.37 1.22 -19.20 16 18 O -0.99 -44.70 15.57 -127.65 -1.99 -46.69 16 19 O -1.00 -50.30 16.85 -127.65 -2.15 -52.45 16 20 C -0.18 -7.65 6.84 22.43 0.15 -7.49 16 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 23 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 24 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 25 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 26 H 0.13 4.27 4.79 -2.91 -0.01 4.26 16 27 H 0.29 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.14 3.69 6.66 -2.39 -0.02 3.67 16 29 H 0.15 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.13 3.88 8.14 -2.39 -0.02 3.87 16 31 H 0.11 5.42 6.52 -2.91 -0.02 5.40 16 Total: -1.00 -66.87 266.81 1.86 -65.01 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.91 Total: 21.61 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 3.76 Total: -51.38 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -0.17 Total: -84.02 kcal Atomic # 8 Polarization: -95.00 SS G_CDS: -4.14 Total: -99.14 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.80 Total: 39.86 kcal Atomic # 16 Polarization: 108.36 SS G_CDS: -0.30 Total: 108.06 kcal Total: -66.87 1.86 -65.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586185376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.946 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds