Wall clock time and date at job start Mon Mar 30 2020 04:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48498 * 109.46852 * 269.99875 * 3 2 1 5 5 H 1.48507 * 109.47096 * 29.99435 * 3 2 1 6 6 H 1.48500 * 109.47279 * 149.99329 * 3 2 1 7 7 C 1.40071 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.39909 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.38286 * 125.40803 * 180.26906 * 9 7 2 11 11 C 1.36810 * 114.19887 * 180.20488 * 10 9 7 12 12 C 1.50703 * 122.32626 * 179.77751 * 11 10 9 13 13 H 1.09002 * 109.47083 * 339.74083 * 12 11 10 14 14 N 1.46898 * 109.47113 * 219.73884 * 12 11 10 15 15 C 1.53000 * 109.46801 * 99.73797 * 12 11 10 16 16 C 1.52997 * 109.47060 * 184.99876 * 15 12 11 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 O 1.20826 * 119.99685 * 0.02562 * 17 16 15 19 19 O 1.34232 * 120.00079 * 179.97438 * 17 16 15 20 20 C 1.34529 * 115.34279 * 359.51095 * 11 10 9 21 21 S 1.75797 * 110.14599 * 0.26944 * 20 11 10 22 22 H 0.96997 * 120.00531 * 0.02562 * 1 2 3 23 23 H 1.08002 * 122.90069 * 0.02562 * 10 9 7 24 24 H 1.00901 * 110.99892 * 176.04953 * 14 12 11 25 25 H 1.00899 * 111.00057 * 300.00501 * 14 12 11 26 26 H 1.09002 * 109.47398 * 305.00045 * 15 12 11 27 27 H 1.09001 * 109.47194 * 65.00225 * 15 12 11 28 28 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 29 29 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 30 30 H 0.96708 * 116.99537 * 180.02562 * 19 17 16 31 31 H 1.08001 * 124.92724 * 180.22967 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4400 2.6528 0.7000 6 1 3.5402 1.4403 0.7002 7 6 2.0091 -1.2130 0.0005 8 1 3.0891 -1.2129 0.0010 9 6 1.3096 -2.4247 0.0005 10 6 1.8851 -3.6821 0.0063 11 6 0.9838 -4.7113 0.0005 12 6 1.4110 -6.1566 0.0004 13 1 2.4402 -6.2312 -0.3506 14 7 0.5327 -6.9267 -0.8903 15 6 1.3147 -6.7168 1.4209 16 6 1.8653 -8.1441 1.4446 17 6 1.7700 -8.6962 2.8435 18 8 1.3085 -8.0179 3.7305 19 8 2.1968 -9.9420 3.1039 20 6 -0.3103 -4.3436 0.0005 21 16 -0.4415 -2.5905 0.0005 22 1 -0.4851 0.8400 -0.0004 23 1 2.9537 -3.8381 0.0119 24 1 0.8377 -7.8861 -0.9579 25 1 -0.4278 -6.8732 -0.5859 26 1 1.8965 -6.0917 2.0983 27 1 0.2721 -6.7243 1.7387 28 1 1.2835 -8.7692 0.7672 29 1 2.9079 -8.1367 1.1268 30 1 2.1148 -10.2524 4.0161 31 1 -1.1471 -5.0263 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687731647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:12 Heat of formation + Delta-G solvation = -94.461513 kcal Electronic energy + Delta-G solvation = -16067.567847 eV Core-core repulsion = 13246.080831 eV Total energy + Delta-G solvation = -2821.487016 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31926 -37.57079 -36.21509 -34.80390 -33.46527 -31.12210 -28.83752 -26.39691 -24.88887 -23.15508 -21.00459 -19.94613 -18.23527 -17.84463 -17.34869 -16.39293 -16.24426 -15.58073 -15.15669 -14.37220 -14.10438 -13.64302 -13.49409 -13.07854 -12.30300 -12.19920 -11.93419 -11.63941 -11.62717 -11.42227 -11.01899 -10.92444 -10.82296 -10.62277 -10.43158 -10.29448 -9.73826 -9.43041 -8.79441 -8.26474 -7.30325 -6.89946 -6.58129 -4.43302 2.14251 2.68689 2.94700 2.97924 3.02967 3.17985 3.74531 3.78694 4.11995 4.23372 4.82696 4.98425 5.01740 5.12247 5.28102 5.52515 5.75905 5.82472 6.15023 6.35649 6.52920 6.54898 6.83170 6.93852 7.30792 7.53617 7.67753 7.80686 7.85683 7.94575 8.16513 8.27143 8.64414 8.68017 9.94622 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.035293 B = 0.004586 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.164583 B = 6104.355600 C = 6397.756185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.052 3.948 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.395 4.395 8 H 0.091 0.909 9 C 0.039 3.961 10 C -0.349 4.349 11 C -0.029 4.029 12 C 0.156 3.844 13 H 0.077 0.923 14 N -0.837 5.837 15 C -0.135 4.135 16 C -0.115 4.115 17 C 0.475 3.525 18 O -0.510 6.510 19 O -0.523 6.523 20 C -0.393 4.393 21 S 0.122 5.878 22 H 0.294 0.706 23 H 0.097 0.903 24 H 0.325 0.675 25 H 0.339 0.661 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.407 0.593 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -10.696 2.258 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.167 4.167 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.431 4.431 8 H 0.109 0.891 9 C -0.081 4.081 10 C -0.375 4.375 11 C -0.041 4.041 12 C 0.042 3.958 13 H 0.095 0.905 14 N -0.366 5.366 15 C -0.175 4.175 16 C -0.152 4.152 17 C 0.318 3.682 18 O -0.397 6.397 19 O -0.335 6.335 20 C -0.529 4.529 21 S 0.383 5.617 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.138 0.862 25 H 0.153 0.847 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.265 0.735 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.969 -8.756 1.517 8.939 hybrid contribution 1.268 -1.172 1.520 2.300 sum 2.237 -9.927 3.037 10.620 Atomic orbital electron populations 1.68877 1.07524 1.30261 1.34978 1.26153 0.95058 1.02386 0.93127 0.85880 0.80056 0.79065 0.79419 1.19140 1.19908 1.18355 1.19110 0.95199 0.88874 1.39932 0.89111 1.21737 0.94721 0.95604 0.96063 1.19478 0.97377 0.90871 1.29747 1.17746 0.92902 0.92073 1.01368 1.20022 0.96393 0.91711 0.87658 0.90511 1.58900 1.06423 1.15373 1.55873 1.22310 1.02453 0.92130 1.00639 1.21514 1.05087 0.98598 0.90040 1.23726 0.73381 0.78676 0.92457 1.90753 1.41714 1.59152 1.48126 1.84559 1.78332 1.32818 1.37769 1.25085 0.97978 1.01693 1.28129 1.84449 1.06020 0.95898 1.75345 0.89345 0.88473 0.86243 0.84709 0.90222 0.91119 0.88238 0.87560 0.73503 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.77 10.65 55.56 0.59 -19.17 16 2 C 0.05 1.27 5.50 -17.27 -0.09 1.18 16 3 Si 0.93 18.19 29.56 -169.99 -5.03 13.16 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 7 C -0.40 -10.40 9.29 -38.27 -0.36 -10.76 16 8 H 0.09 2.27 7.85 -52.49 -0.41 1.86 16 9 C 0.04 1.06 6.19 -38.94 -0.24 0.82 16 10 C -0.35 -8.92 9.95 -40.08 -0.40 -9.32 16 11 C -0.03 -0.67 4.84 -106.45 -0.51 -1.18 16 12 C 0.16 2.74 3.11 -68.86 -0.21 2.53 16 13 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 14 N -0.84 -12.92 9.03 -5.65 -0.05 -12.97 16 15 C -0.14 -2.12 4.13 -26.73 -0.11 -2.23 16 16 C -0.11 -1.31 5.58 -27.89 -0.16 -1.47 16 17 C 0.48 5.95 8.33 36.00 0.30 6.25 16 18 O -0.51 -8.39 16.74 -18.75 -0.31 -8.71 16 19 O -0.52 -4.91 13.42 -39.26 -0.53 -5.43 16 20 C -0.39 -9.36 10.42 29.42 0.31 -9.05 16 21 S 0.12 3.15 20.27 -107.50 -2.18 0.97 16 22 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 23 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 24 H 0.33 3.88 7.55 -39.29 -0.30 3.58 16 25 H 0.34 5.19 7.71 -39.29 -0.30 4.89 16 26 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 27 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.10 0.93 6.87 -51.93 -0.36 0.57 16 29 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.41 2.15 9.10 45.56 0.41 2.57 16 31 H 0.11 2.49 7.16 -52.49 -0.38 2.11 16 LS Contribution 283.35 15.07 4.27 4.27 Total: -1.00 -30.81 283.35 -7.28 -38.09 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -2.57 Total: 13.02 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.48 Total: -23.23 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.54 Total: -32.15 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.84 Total: -14.14 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.18 Total: 0.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.81 -7.28 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687731647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.369 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds