Wall clock time and date at job start Mon Mar 30 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00353 * 2 1 4 4 C 1.46907 * 110.99726 * 123.94875 * 2 1 3 5 5 C 1.53002 * 109.46876 * 66.04703 * 4 2 1 6 6 H 1.09001 * 110.35208 * 307.14233 * 5 4 2 7 7 C 1.54597 * 110.31186 * 69.28455 * 5 4 2 8 8 C 1.54927 * 102.92378 * 140.87510 * 7 5 4 9 9 N 1.48535 * 103.22936 * 322.58452 * 8 7 5 10 10 C 1.46893 * 111.00310 * 159.72216 * 9 8 7 11 11 C 1.53004 * 109.47282 * 52.60480 * 10 9 8 12 12 C 1.52997 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.47908 * 105.81494 * 39.20793 * 9 8 7 23 23 H 1.08998 * 109.46768 * 296.05279 * 1 2 3 24 24 H 1.09000 * 109.46531 * 56.04913 * 1 2 3 25 25 H 1.08993 * 109.47393 * 176.04936 * 1 2 3 26 26 H 1.09005 * 109.47214 * 183.94752 * 3 2 1 27 27 H 1.09000 * 109.47115 * 303.94822 * 3 2 1 28 28 H 1.09004 * 109.47298 * 63.95053 * 3 2 1 29 29 H 1.08994 * 109.47443 * 306.05105 * 4 2 1 30 30 H 1.08997 * 109.47555 * 186.04150 * 4 2 1 31 31 H 1.09002 * 110.72268 * 259.23660 * 7 5 4 32 32 H 1.09000 * 110.72350 * 22.33478 * 7 5 4 33 33 H 1.09006 * 110.66856 * 204.15021 * 8 7 5 34 34 H 1.09007 * 110.67250 * 81.02037 * 8 7 5 35 35 H 1.09000 * 109.47487 * 292.60446 * 10 9 8 36 36 H 1.08998 * 109.47055 * 172.60736 * 10 9 8 37 37 H 1.08995 * 109.46638 * 59.99969 * 11 10 9 38 38 H 1.08998 * 109.46846 * 300.00422 * 11 10 9 39 39 H 1.09000 * 109.47849 * 59.99917 * 12 11 10 40 40 H 1.09007 * 109.47288 * 299.99511 * 12 11 10 41 41 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 42 42 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.91676 * 94.02363 * 22 9 8 45 45 H 1.09004 * 109.91226 * 215.12053 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 1 0.5597 -2.3524 0.8044 7 6 2.4227 -2.8606 -0.2050 8 6 2.7821 -4.2720 0.3232 9 7 3.0663 -4.0343 1.7617 10 6 2.9584 -5.2801 2.5325 11 6 3.8280 -6.3586 1.8831 12 6 3.7151 -7.6563 2.6856 13 6 4.5852 -8.7346 2.0366 14 6 4.4735 -10.0131 2.8266 15 1 3.8452 -10.0524 3.7042 16 6 5.1784 -11.1306 2.4327 17 7 5.9438 -11.0826 1.3643 18 14 5.0460 -12.7130 3.4165 19 1 4.1278 -12.5065 4.5651 20 1 4.5162 -13.7939 2.5468 21 1 6.3893 -13.0967 3.9201 22 6 2.0645 -3.0438 2.2122 23 1 -0.3633 0.4514 0.9232 24 1 -0.3632 0.5740 -0.8525 25 1 -0.3634 -1.0251 -0.0708 26 1 3.0829 1.3431 -0.0708 27 1 1.5900 1.9162 -0.8525 28 1 1.7044 1.8723 0.9233 29 1 1.5610 -0.3872 2.0629 30 1 3.0797 -0.6612 1.1758 31 1 1.7986 -2.9296 -1.0961 32 1 3.3231 -2.2817 -0.4105 33 1 3.6655 -4.6594 -0.1845 34 1 1.9394 -4.9533 0.2050 35 1 1.9197 -5.6103 2.5459 36 1 3.2976 -5.1061 3.5536 37 1 4.8667 -6.0284 1.8697 38 1 3.4889 -6.5326 0.8619 39 1 2.6764 -7.9863 2.6987 40 1 4.0541 -7.4826 3.7069 41 1 5.6239 -8.4044 2.0238 42 1 4.2466 -8.9084 1.0151 43 1 6.4399 -11.8688 1.0875 44 1 1.2039 -3.5556 2.6427 45 1 2.5082 -2.3771 2.9517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687816343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:02 Heat of formation + Delta-G solvation = -14.218995 kcal Electronic energy + Delta-G solvation = -18770.419534 eV Core-core repulsion = 16014.877169 eV Total energy + Delta-G solvation = -2755.542364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48852 -37.39260 -34.88469 -32.94407 -31.37443 -29.51438 -28.23100 -27.90334 -26.00239 -24.31288 -22.40421 -22.05653 -20.44103 -20.13951 -19.63928 -16.45737 -16.11440 -15.81037 -15.48702 -15.13465 -14.91031 -14.43778 -14.40080 -13.71240 -13.47598 -12.94826 -12.74320 -12.45146 -12.42801 -12.21867 -12.04251 -11.77658 -11.59660 -11.35358 -11.27278 -11.04862 -10.94519 -10.85539 -10.56261 -10.46628 -10.40284 -10.28939 -9.58392 -9.22090 -8.95980 -8.65548 -8.30885 -8.27756 -5.95255 -3.97289 3.33501 3.40695 3.45102 3.61911 4.12299 4.49807 4.53829 4.63010 4.70878 4.86590 5.02569 5.13964 5.18408 5.25966 5.34085 5.38197 5.40192 5.45801 5.49254 5.53152 5.55689 5.61371 5.62897 5.76230 5.88771 5.95039 6.06280 6.07973 6.17447 6.25695 6.33497 6.54531 6.70629 6.71824 6.85967 7.00763 7.03012 7.14400 7.29732 7.74435 7.90439 8.06203 8.49167 9.10501 9.66468 11.16176 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.068555 B = 0.002745 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.332584 B =10198.154218 C =10332.766469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.096 4.096 6 H 0.073 0.927 7 C -0.103 4.103 8 C 0.031 3.969 9 N -0.517 5.517 10 C 0.048 3.952 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.040 3.960 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.042 0.958 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 23.500 -2.257 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.269 5.269 3 C -0.124 4.124 4 C -0.062 4.062 5 C -0.115 4.115 6 H 0.091 0.909 7 C -0.141 4.141 8 C -0.096 4.096 9 N -0.241 5.241 10 C -0.080 4.080 11 C -0.155 4.155 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.089 4.089 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.527 23.360 -2.699 25.372 hybrid contribution -1.159 -0.889 1.203 1.893 sum -10.686 22.471 -1.496 24.927 Atomic orbital electron populations 1.22434 0.87632 1.02397 1.00245 1.61951 1.07840 1.13618 1.43512 1.22375 1.00922 0.88787 1.00280 1.22239 1.00481 0.92797 0.90688 1.22033 1.00004 0.93893 0.95583 0.90862 1.22408 1.00020 0.95031 0.96688 1.23290 1.00432 0.96601 0.89319 1.64828 1.46348 1.10063 1.02862 1.22417 0.98532 0.89076 0.97994 1.21716 0.99721 0.94596 0.99428 1.21596 1.00305 0.94208 0.98592 1.19096 0.94633 0.92093 0.95799 1.21330 1.26826 0.96030 1.11498 0.92739 1.25039 0.95417 0.98945 0.95202 1.69978 1.29523 1.29539 1.24539 0.86558 0.77796 0.83616 0.80159 1.19787 1.21051 1.21029 1.22889 0.94033 0.95077 0.96925 0.95819 0.91538 0.91087 0.91247 0.91458 0.95849 0.94979 0.90161 0.91317 0.90638 0.89712 0.93841 0.95107 0.90969 0.91699 0.92512 0.93746 0.93463 0.96601 0.96761 0.93116 0.93941 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.34 60.07 0.56 0.72 16 2 N -0.55 -4.66 4.88 -251.26 -1.23 -5.88 16 3 C 0.02 0.17 9.57 60.06 0.57 0.75 16 4 C 0.07 0.58 4.05 -3.82 -0.02 0.57 16 5 C -0.10 -0.93 2.95 -89.26 -0.26 -1.20 16 6 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 7 C -0.10 -1.11 6.48 -24.88 -0.16 -1.27 16 8 C 0.03 0.40 5.10 -1.90 -0.01 0.39 16 9 N -0.52 -7.05 5.40 -230.45 -1.24 -8.30 16 10 C 0.05 0.72 5.03 -3.83 -0.02 0.70 16 11 C -0.12 -2.08 4.87 -26.73 -0.13 -2.21 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.04 0.44 6.35 -2.75 -0.02 0.43 16 23 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 24 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.07 0.53 6.35 -51.93 -0.33 0.20 16 26 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 33 H 0.08 1.14 7.66 -51.93 -0.40 0.75 16 34 H 0.04 0.57 8.00 -51.92 -0.42 0.16 16 35 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.01 6.79 -51.93 -0.35 0.66 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 45 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -30.71 348.54 -10.54 -41.25 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -8.87 Total: -5.46 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.17 Total: -17.08 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -1.73 Total: -41.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.71 -10.54 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.030 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds