Wall clock time and date at job start Mon Mar 30 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00353 * 2 1 4 4 C 1.46907 * 110.99726 * 123.94875 * 2 1 3 5 5 C 1.53002 * 109.46876 * 66.04703 * 4 2 1 6 6 H 1.09001 * 110.35208 * 307.14233 * 5 4 2 7 7 C 1.54597 * 110.31186 * 69.28455 * 5 4 2 8 8 C 1.54927 * 102.92378 * 140.87510 * 7 5 4 9 9 N 1.48535 * 103.22936 * 322.58452 * 8 7 5 10 10 C 1.46893 * 111.00310 * 159.72216 * 9 8 7 11 11 C 1.53004 * 109.47282 * 52.60480 * 10 9 8 12 12 C 1.52997 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.47908 * 105.81494 * 39.20793 * 9 8 7 23 23 H 1.08998 * 109.46768 * 296.05279 * 1 2 3 24 24 H 1.09000 * 109.46531 * 56.04913 * 1 2 3 25 25 H 1.08993 * 109.47393 * 176.04936 * 1 2 3 26 26 H 1.09005 * 109.47214 * 183.94752 * 3 2 1 27 27 H 1.09000 * 109.47115 * 303.94822 * 3 2 1 28 28 H 1.09004 * 109.47298 * 63.95053 * 3 2 1 29 29 H 1.08994 * 109.47443 * 306.05105 * 4 2 1 30 30 H 1.08997 * 109.47555 * 186.04150 * 4 2 1 31 31 H 1.09002 * 110.72268 * 259.23660 * 7 5 4 32 32 H 1.09000 * 110.72350 * 22.33478 * 7 5 4 33 33 H 1.09006 * 110.66856 * 204.15021 * 8 7 5 34 34 H 1.09007 * 110.67250 * 81.02037 * 8 7 5 35 35 H 1.09000 * 109.47487 * 292.60446 * 10 9 8 36 36 H 1.08998 * 109.47055 * 172.60736 * 10 9 8 37 37 H 1.08995 * 109.46638 * 59.99969 * 11 10 9 38 38 H 1.08998 * 109.46846 * 300.00422 * 11 10 9 39 39 H 1.09000 * 109.47849 * 59.99917 * 12 11 10 40 40 H 1.09007 * 109.47288 * 299.99511 * 12 11 10 41 41 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 42 42 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 43 43 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.91676 * 94.02363 * 22 9 8 45 45 H 1.09004 * 109.91226 * 215.12053 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 1 0.5597 -2.3524 0.8044 7 6 2.4227 -2.8606 -0.2050 8 6 2.7821 -4.2720 0.3232 9 7 3.0663 -4.0343 1.7617 10 6 2.9584 -5.2801 2.5325 11 6 3.8280 -6.3586 1.8831 12 6 3.7151 -7.6563 2.6856 13 6 4.5852 -8.7346 2.0366 14 6 4.4735 -10.0131 2.8266 15 1 3.8452 -10.0524 3.7042 16 6 5.1784 -11.1306 2.4327 17 7 5.9438 -11.0826 1.3643 18 14 5.0460 -12.7130 3.4165 19 1 4.1278 -12.5065 4.5651 20 1 4.5162 -13.7939 2.5468 21 1 6.3893 -13.0967 3.9201 22 6 2.0645 -3.0438 2.2122 23 1 -0.3633 0.4514 0.9232 24 1 -0.3632 0.5740 -0.8525 25 1 -0.3634 -1.0251 -0.0708 26 1 3.0829 1.3431 -0.0708 27 1 1.5900 1.9162 -0.8525 28 1 1.7044 1.8723 0.9233 29 1 1.5610 -0.3872 2.0629 30 1 3.0797 -0.6612 1.1758 31 1 1.7986 -2.9296 -1.0961 32 1 3.3231 -2.2817 -0.4105 33 1 3.6655 -4.6594 -0.1845 34 1 1.9394 -4.9533 0.2050 35 1 1.9197 -5.6103 2.5459 36 1 3.2976 -5.1061 3.5536 37 1 4.8667 -6.0284 1.8697 38 1 3.4889 -6.5326 0.8619 39 1 2.6764 -7.9863 2.6987 40 1 4.0541 -7.4826 3.7069 41 1 5.6239 -8.4044 2.0238 42 1 4.2466 -8.9084 1.0151 43 1 6.4399 -11.8688 1.0875 44 1 1.2039 -3.5556 2.6427 45 1 2.5082 -2.3771 2.9517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687816343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:01 Heat of formation + Delta-G solvation = -33.932951 kcal Electronic energy + Delta-G solvation = -18771.274395 eV Core-core repulsion = 16014.877169 eV Total energy + Delta-G solvation = -2756.397226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40908 -38.18763 -36.50970 -34.72520 -32.87323 -30.44953 -29.81983 -28.46031 -27.14129 -25.83927 -23.72827 -22.91982 -21.97931 -21.31468 -20.68759 -18.43568 -17.22180 -16.82004 -16.51505 -16.33741 -16.06472 -15.76175 -15.38489 -14.90676 -14.53683 -14.33912 -13.88068 -13.81054 -13.63399 -13.24543 -13.02071 -12.92893 -12.74675 -12.61149 -12.53250 -12.37139 -12.23776 -12.16548 -11.96599 -11.89748 -11.67293 -11.36107 -11.31595 -11.27520 -10.97128 -10.56534 -9.34644 -9.25977 -8.20340 -6.31947 1.39204 1.39850 1.53391 2.40562 2.98569 3.08370 3.12280 3.73454 3.77325 3.88361 4.11433 4.18053 4.28420 4.37633 4.43851 4.49202 4.51524 4.53626 4.61828 4.63787 4.70543 4.75193 4.79962 4.84724 4.87243 4.94222 5.00182 5.04181 5.08009 5.12620 5.20269 5.25451 5.26905 5.33755 5.39102 5.54137 5.76559 5.85998 5.99378 6.09027 6.12956 6.14216 6.25421 6.85695 7.37426 8.91876 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.068555 B = 0.002745 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.332584 B =10198.154218 C =10332.766469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.559 5.559 3 C 0.025 3.975 4 C 0.072 3.928 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.095 4.095 8 C 0.028 3.972 9 N -0.529 5.529 10 C 0.058 3.942 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.023 3.977 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.039 3.961 23 H 0.027 0.973 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.051 0.949 41 H -0.011 1.011 42 H -0.011 1.011 43 H 0.264 0.736 44 H 0.046 0.954 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 24.148 -1.345 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.283 5.283 3 C -0.123 4.123 4 C -0.056 4.056 5 C -0.107 4.107 6 H 0.099 0.901 7 C -0.133 4.133 8 C -0.099 4.099 9 N -0.253 5.253 10 C -0.070 4.070 11 C -0.144 4.144 12 C -0.134 4.134 13 C -0.014 4.014 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.089 4.089 23 H 0.045 0.955 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.798 24.031 -1.783 26.405 hybrid contribution -0.744 -1.062 0.869 1.561 sum -11.542 22.968 -0.915 25.721 Atomic orbital electron populations 1.22454 0.86913 1.02506 1.00802 1.61950 1.08613 1.14419 1.43327 1.22398 1.00912 0.88160 1.00866 1.22129 1.00107 0.92201 0.91195 1.21974 1.00185 0.94265 0.94290 0.90093 1.22328 1.00088 0.93553 0.97316 1.23293 0.99707 0.97869 0.89070 1.64802 1.47719 1.09667 1.03094 1.22223 0.97941 0.88860 0.98001 1.21534 0.99873 0.94000 0.98948 1.21400 0.99207 0.94102 0.98707 1.19021 0.94065 0.93512 0.94800 1.21764 1.27154 0.97220 1.11989 0.92178 1.26040 0.94801 1.03020 0.96296 1.70112 1.30305 1.30900 1.26215 0.85364 0.78196 0.78539 0.78734 1.18526 1.20267 1.20285 1.22946 0.93588 0.94639 0.97704 0.95478 0.90731 0.91245 0.91337 0.90603 0.95461 0.94424 0.90855 0.90582 0.91119 0.91056 0.94208 0.94574 0.90468 0.92753 0.92898 0.93191 0.92975 0.99276 0.99298 0.92755 0.93545 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.34 127.69 1.19 1.46 16 2 N -0.56 -8.54 4.88 -948.85 -4.63 -13.17 16 3 C 0.02 0.30 9.57 127.69 1.22 1.53 16 4 C 0.07 1.14 4.05 86.30 0.35 1.49 16 5 C -0.09 -1.56 2.95 -9.92 -0.03 -1.59 16 6 H 0.08 1.34 6.32 -2.39 -0.02 1.33 16 7 C -0.09 -1.92 6.48 31.80 0.21 -1.71 16 8 C 0.03 0.71 5.10 86.65 0.44 1.15 16 9 N -0.53 -13.88 5.40 -883.02 -4.76 -18.65 16 10 C 0.06 1.68 5.03 86.31 0.43 2.11 16 11 C -0.11 -3.78 4.87 30.59 0.15 -3.63 16 12 C -0.10 -4.09 5.15 30.59 0.16 -3.94 16 13 C 0.02 1.27 4.97 29.85 0.15 1.42 16 14 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 18 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 C 0.04 0.81 6.35 86.44 0.55 1.36 16 23 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.07 0.89 6.35 -2.39 -0.02 0.87 16 26 H 0.07 0.84 8.12 -2.38 -0.02 0.83 16 27 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 28 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 30 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.51 7.76 -2.39 -0.02 1.49 16 33 H 0.07 1.96 7.66 -2.38 -0.02 1.94 16 34 H 0.04 1.02 8.00 -2.38 -0.02 1.00 16 35 H 0.04 1.01 7.81 -2.39 -0.02 1.00 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.92 6.79 -2.39 -0.02 1.90 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.15 8.14 -2.38 -0.02 2.14 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 43 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.05 0.93 7.57 -2.39 -0.02 0.92 16 45 H 0.08 1.59 7.69 -2.39 -0.02 1.58 16 Total: -1.00 -65.41 348.54 -0.67 -66.08 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.90 Total: 8.56 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 5.52 Total: -31.86 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -9.11 Total: -89.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.41 -0.67 -66.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.150 kcal (2) G-P(sol) polarization free energy of solvation -65.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds