Wall clock time and date at job start Mon Mar 30 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 115.55488 * 2 1 4 4 N 1.46504 * 109.46632 * 279.68949 * 3 2 1 5 5 S 1.65599 * 119.99327 * 165.49254 * 4 3 2 6 6 O 1.42106 * 106.39878 * 178.53736 * 5 4 3 7 7 O 1.42094 * 106.40951 * 311.46073 * 5 4 3 8 8 C 1.76207 * 107.21698 * 65.00643 * 5 4 3 9 9 H 1.07993 * 119.99674 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99913 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99601 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 119.99922 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47189 * 90.00444 * 12 10 8 14 14 H 1.48498 * 109.46980 * 209.99932 * 12 10 8 15 15 H 1.48500 * 109.47504 * 330.00172 * 12 10 8 16 16 C 1.53008 * 117.51633 * 145.70205 * 2 1 3 17 17 C 1.52999 * 59.99992 * 107.48017 * 16 2 1 18 18 F 1.39899 * 117.49744 * 252.51145 * 17 16 2 19 19 F 1.39893 * 117.50070 * 107.49224 * 17 16 2 20 20 H 1.08999 * 109.47011 * 66.59803 * 1 2 3 21 21 H 1.08991 * 109.47468 * 186.60185 * 1 2 3 22 22 H 1.09008 * 109.46860 * 306.60193 * 1 2 3 23 23 H 1.08991 * 109.47127 * 159.69361 * 3 2 1 24 24 H 1.08996 * 109.46809 * 39.68527 * 3 2 1 25 25 H 0.96994 * 120.00470 * 345.77731 * 4 3 2 26 26 H 0.97001 * 119.99771 * 180.02562 * 11 10 8 27 27 H 1.09001 * 117.49440 * 214.96586 * 16 2 1 28 28 H 1.08999 * 117.49480 * 359.97438 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 7 2.1909 1.9211 -1.3616 5 16 2.5069 3.5269 -1.6144 6 8 2.4682 3.7269 -3.0208 7 8 1.6857 4.2457 -0.7043 8 6 4.1723 3.8154 -1.1166 9 1 4.7696 3.0019 -0.7323 10 6 4.7129 5.0798 -1.2176 11 7 5.9558 5.2952 -0.8456 12 14 3.6798 6.4867 -1.8830 13 1 2.9674 7.1510 -0.7621 14 1 4.5615 7.4705 -2.5612 15 1 2.6894 5.9573 -2.8546 16 6 2.2369 -1.1210 0.7647 17 6 2.2364 -1.1208 -0.7653 18 9 1.4339 -2.0674 -1.4112 19 9 3.4363 -0.8051 -1.4116 20 1 -0.3633 0.4082 -0.9431 21 1 -0.3634 -1.0207 0.1181 22 1 -0.3633 0.6128 0.8251 23 1 3.2162 1.2924 0.3566 24 1 1.6332 2.0493 0.6562 25 1 2.0023 1.3395 -2.1146 26 1 6.3359 6.1848 -0.9164 27 1 3.1721 -0.8751 1.2676 28 1 1.6119 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689194333.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:18 Heat of formation + Delta-G solvation = -154.040737 kcal Electronic energy + Delta-G solvation = -17643.296919 eV Core-core repulsion = 14264.996824 eV Total energy + Delta-G solvation = -3378.300095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.053 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.59714 -47.25404 -37.96244 -35.61967 -34.43592 -33.50419 -33.00684 -28.70300 -26.43994 -25.67009 -22.63943 -20.02486 -19.03724 -17.69205 -17.47452 -16.76234 -16.45673 -15.89128 -15.27330 -15.01476 -14.01360 -13.88175 -13.83962 -13.70696 -13.43830 -13.30129 -13.00826 -12.89091 -12.62861 -12.30981 -11.90784 -11.42257 -11.31159 -10.84641 -10.63196 -10.55498 -10.49491 -9.83091 -9.75848 -9.25761 -9.20503 -8.60517 -6.79791 -5.33663 2.04058 3.00183 3.02688 3.08503 3.18174 3.27744 3.95775 4.05532 4.21276 4.41630 4.59858 4.63507 4.73140 5.29985 5.32403 5.37948 5.60141 5.64525 5.71955 5.84693 5.93450 6.08702 6.15500 6.50672 7.47996 7.67670 8.21862 8.71225 10.32576 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.037603 B = 0.007120 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.442983 B = 3931.676937 C = 4142.743866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.129 4.129 3 C 0.160 3.840 4 N -1.122 6.122 5 S 2.677 3.323 6 O -1.007 7.007 7 O -1.011 7.011 8 C -1.015 5.015 9 H 0.122 0.878 10 C 0.153 3.847 11 N -0.823 5.823 12 Si 0.802 3.198 13 H -0.246 1.246 14 H -0.255 1.255 15 H -0.220 1.220 16 C -0.164 4.164 17 C 0.196 3.804 18 F -0.163 7.163 19 F -0.151 7.151 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.406 0.594 26 H 0.280 0.720 27 H 0.126 0.874 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -11.534 3.956 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 C 0.033 3.967 4 N -0.877 5.877 5 S 2.779 3.221 6 O -0.997 6.997 7 O -1.001 7.001 8 C -1.149 5.149 9 H 0.140 0.860 10 C -0.067 4.067 11 N -0.452 5.452 12 Si 0.622 3.378 13 H -0.170 1.170 14 H -0.179 1.179 15 H -0.142 1.142 16 C -0.203 4.203 17 C 0.159 3.841 18 F -0.144 7.144 19 F -0.131 7.131 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.237 0.763 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.193 -10.703 3.758 13.993 hybrid contribution 0.533 0.027 -0.524 0.748 sum -7.660 -10.676 3.234 13.531 Atomic orbital electron populations 1.21369 0.89727 1.02674 1.03820 1.23206 0.97460 0.92344 1.00182 1.20672 1.00443 0.90735 0.84817 1.55457 1.89757 1.30376 1.12110 1.01310 0.77059 0.70360 0.73412 1.93481 1.89587 1.83509 1.33135 1.93401 1.70978 1.69712 1.66016 1.30442 1.20963 1.04313 1.59202 0.86035 1.24431 0.94458 0.97809 0.89959 1.69990 1.12839 1.23720 1.38692 0.87851 0.82868 0.84546 0.82485 1.17007 1.17936 1.14225 1.24511 1.04420 1.00268 0.91057 1.20105 0.81395 0.93800 0.88775 1.92996 1.72378 1.65335 1.83669 1.93081 1.44186 1.92549 1.83319 0.90934 0.91738 0.90320 0.90846 0.88817 0.76261 0.90916 0.85538 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.43 37.16 0.35 -0.89 15 2 C -0.13 -1.59 2.17 -154.50 -0.34 -1.92 15 3 C 0.16 2.52 5.77 -4.04 -0.02 2.50 15 4 N -1.12 -21.24 5.90 -10.61 -0.06 -21.30 15 5 S 2.68 65.99 4.24 -107.50 -0.46 65.54 15 6 O -1.01 -27.10 16.02 -57.17 -0.92 -28.02 15 7 O -1.01 -26.24 16.31 -57.17 -0.93 -27.18 15 8 C -1.01 -28.11 10.26 30.60 0.31 -27.79 15 9 H 0.12 3.39 8.06 -52.49 -0.42 2.97 15 10 C 0.15 4.38 5.47 -17.82 -0.10 4.29 15 11 N -0.82 -23.76 13.96 55.43 0.77 -22.98 15 12 Si 0.80 20.56 26.54 -169.99 -4.51 16.05 15 13 H -0.25 -6.13 7.11 56.52 0.40 -5.73 15 14 H -0.26 -6.02 7.11 56.52 0.40 -5.62 15 15 H -0.22 -5.76 5.60 56.52 0.32 -5.44 15 16 C -0.16 -1.60 9.83 -26.73 -0.26 -1.86 15 17 C 0.20 2.57 4.92 -26.73 -0.13 2.44 15 18 F -0.16 -2.16 17.02 2.25 0.04 -2.12 15 19 F -0.15 -2.39 17.07 2.25 0.04 -2.35 15 20 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.06 0.56 7.91 -51.93 -0.41 0.15 15 22 H 0.08 0.74 8.14 -51.92 -0.42 0.31 15 23 H 0.07 1.14 7.94 -51.93 -0.41 0.73 15 24 H 0.09 1.44 7.75 -51.93 -0.40 1.04 15 25 H 0.41 6.99 8.48 -34.47 -0.29 6.69 15 26 H 0.28 7.34 8.31 -40.82 -0.34 7.00 15 27 H 0.13 1.12 8.08 -51.93 -0.42 0.70 15 28 H 0.12 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -32.89 265.67 -5.06 -37.95 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.85 Total: 3.65 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.19 Total: -23.25 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.71 Total: -44.28 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.85 Total: -55.20 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.08 Total: -4.47 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.51 Total: 16.05 kcal Atomic # 16 Polarization: 65.99 SS G_CDS: -0.46 Total: 65.54 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.89 -5.06 -37.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689194333.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.089 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds