Wall clock time and date at job start Mon Mar 30 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 115.55488 * 2 1 4 4 N 1.46504 * 109.46632 * 279.68949 * 3 2 1 5 5 S 1.65599 * 119.99327 * 165.49254 * 4 3 2 6 6 O 1.42106 * 106.39878 * 178.53736 * 5 4 3 7 7 O 1.42094 * 106.40951 * 311.46073 * 5 4 3 8 8 C 1.76207 * 107.21698 * 65.00643 * 5 4 3 9 9 H 1.07993 * 119.99674 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99913 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99601 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 119.99922 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47189 * 90.00444 * 12 10 8 14 14 H 1.48498 * 109.46980 * 209.99932 * 12 10 8 15 15 H 1.48500 * 109.47504 * 330.00172 * 12 10 8 16 16 C 1.53008 * 117.51633 * 145.70205 * 2 1 3 17 17 C 1.52999 * 59.99992 * 107.48017 * 16 2 1 18 18 F 1.39899 * 117.49744 * 252.51145 * 17 16 2 19 19 F 1.39893 * 117.50070 * 107.49224 * 17 16 2 20 20 H 1.08999 * 109.47011 * 66.59803 * 1 2 3 21 21 H 1.08991 * 109.47468 * 186.60185 * 1 2 3 22 22 H 1.09008 * 109.46860 * 306.60193 * 1 2 3 23 23 H 1.08991 * 109.47127 * 159.69361 * 3 2 1 24 24 H 1.08996 * 109.46809 * 39.68527 * 3 2 1 25 25 H 0.96994 * 120.00470 * 345.77731 * 4 3 2 26 26 H 0.97001 * 119.99771 * 180.02562 * 11 10 8 27 27 H 1.09001 * 117.49440 * 214.96586 * 16 2 1 28 28 H 1.08999 * 117.49480 * 359.97438 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 7 2.1909 1.9211 -1.3616 5 16 2.5069 3.5269 -1.6144 6 8 2.4682 3.7269 -3.0208 7 8 1.6857 4.2457 -0.7043 8 6 4.1723 3.8154 -1.1166 9 1 4.7696 3.0019 -0.7323 10 6 4.7129 5.0798 -1.2176 11 7 5.9558 5.2952 -0.8456 12 14 3.6798 6.4867 -1.8830 13 1 2.9674 7.1510 -0.7621 14 1 4.5615 7.4705 -2.5612 15 1 2.6894 5.9573 -2.8546 16 6 2.2369 -1.1210 0.7647 17 6 2.2364 -1.1208 -0.7653 18 9 1.4339 -2.0674 -1.4112 19 9 3.4363 -0.8051 -1.4116 20 1 -0.3633 0.4082 -0.9431 21 1 -0.3634 -1.0207 0.1181 22 1 -0.3633 0.6128 0.8251 23 1 3.2162 1.2924 0.3566 24 1 1.6332 2.0493 0.6562 25 1 2.0023 1.3395 -2.1146 26 1 6.3359 6.1848 -0.9164 27 1 3.1721 -0.8751 1.2676 28 1 1.6119 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689194333.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:18 Heat of formation + Delta-G solvation = -179.626020 kcal Electronic energy + Delta-G solvation = -17644.406380 eV Core-core repulsion = 14264.996824 eV Total energy + Delta-G solvation = -3379.409556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.62763 -48.31163 -39.00272 -37.66929 -36.50155 -35.20881 -34.87456 -29.55234 -28.57357 -26.98421 -23.54764 -21.29498 -20.78258 -19.47204 -18.79160 -18.49185 -17.83313 -17.04253 -16.92359 -16.63831 -15.67475 -15.41734 -15.09545 -14.97837 -14.88236 -14.70939 -14.49393 -14.00870 -13.78689 -13.54238 -13.39963 -13.05888 -13.02732 -12.70893 -12.56984 -12.38139 -11.89440 -11.48347 -11.32405 -11.22599 -10.71242 -10.27858 -8.95769 -7.51934 0.12469 1.06221 1.15484 1.22896 1.89969 2.00095 2.12036 2.42963 2.61190 3.21668 3.27233 3.31494 3.66033 3.74804 4.19487 4.37544 4.53492 4.65155 4.75690 4.77855 4.90321 4.94077 5.00127 5.27681 5.39140 6.01910 6.17575 6.54535 8.21864 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.037603 B = 0.007120 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.442983 B = 3931.676937 C = 4142.743866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 C 0.147 3.853 4 N -1.110 6.110 5 S 2.702 3.298 6 O -1.031 7.031 7 O -1.023 7.023 8 C -1.037 5.037 9 H 0.107 0.893 10 C 0.108 3.892 11 N -0.854 5.854 12 Si 0.826 3.174 13 H -0.235 1.235 14 H -0.222 1.222 15 H -0.230 1.230 16 C -0.127 4.127 17 C 0.167 3.833 18 F -0.166 7.166 19 F -0.174 7.174 20 H 0.060 0.940 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.415 0.585 26 H 0.291 0.709 27 H 0.137 0.863 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 -12.247 4.809 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 C 0.021 3.979 4 N -0.869 5.869 5 S 2.801 3.199 6 O -1.021 7.021 7 O -1.013 7.013 8 C -1.169 5.169 9 H 0.125 0.875 10 C -0.109 4.109 11 N -0.484 5.484 12 Si 0.643 3.357 13 H -0.158 1.158 14 H -0.144 1.144 15 H -0.153 1.153 16 C -0.165 4.165 17 C 0.131 3.869 18 F -0.147 7.147 19 F -0.155 7.155 20 H 0.079 0.921 21 H 0.104 0.896 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.249 0.751 26 H 0.101 0.899 27 H 0.155 0.845 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.301 -11.405 4.615 15.423 hybrid contribution 0.891 0.143 -0.754 1.176 sum -8.410 -11.262 3.861 14.576 Atomic orbital electron populations 1.21437 0.88191 1.04273 1.03736 1.23155 0.98468 0.90513 1.01462 1.20958 1.01121 0.93039 0.82779 1.55004 1.89105 1.28661 1.14157 1.00404 0.75514 0.71590 0.72362 1.93440 1.89493 1.84849 1.34365 1.93376 1.70467 1.71224 1.66244 1.30952 1.22985 1.04023 1.58961 0.87531 1.25170 0.95466 0.99873 0.90347 1.70014 1.13782 1.25010 1.39603 0.87478 0.82374 0.83352 0.82519 1.15836 1.14449 1.15286 1.24710 1.04777 0.98569 0.88446 1.20553 0.80979 0.94724 0.90668 1.92983 1.72359 1.65315 1.84011 1.93028 1.45585 1.92843 1.84034 0.92103 0.89582 0.89133 0.91008 0.88384 0.75134 0.89851 0.84460 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.43 71.98 0.68 -1.49 15 2 C -0.13 -2.97 2.17 -52.18 -0.11 -3.08 15 3 C 0.15 4.45 5.77 86.38 0.50 4.95 15 4 N -1.11 -41.43 5.90 -187.49 -1.11 -42.54 15 5 S 2.70 132.51 4.24 -56.49 -0.24 132.27 15 6 O -1.03 -55.33 16.02 -128.00 -2.05 -57.38 15 7 O -1.02 -52.34 16.31 -128.00 -2.09 -54.43 15 8 C -1.04 -58.01 10.26 67.73 0.69 -57.32 15 9 H 0.11 6.10 8.06 -2.91 -0.02 6.07 15 10 C 0.11 6.21 5.47 84.66 0.46 6.67 15 11 N -0.85 -49.43 13.96 21.45 0.30 -49.13 15 12 Si 0.83 41.00 26.54 68.60 1.82 42.82 15 13 H -0.24 -11.19 7.11 99.48 0.71 -10.48 15 14 H -0.22 -9.79 7.11 99.48 0.71 -9.08 15 15 H -0.23 -11.80 5.60 99.48 0.56 -11.24 15 16 C -0.13 -2.04 9.83 30.60 0.30 -1.74 15 17 C 0.17 4.08 4.92 30.60 0.15 4.23 15 18 F -0.17 -4.10 17.02 44.97 0.77 -3.33 15 19 F -0.17 -5.43 17.07 44.97 0.77 -4.67 15 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.09 1.19 7.91 -2.39 -0.02 1.18 15 22 H 0.09 1.43 8.14 -2.38 -0.02 1.41 15 23 H 0.07 2.19 7.94 -2.39 -0.02 2.17 15 24 H 0.10 2.88 7.75 -2.39 -0.02 2.87 15 25 H 0.41 14.10 8.48 -96.75 -0.82 13.28 15 26 H 0.29 15.16 8.31 -92.71 -0.77 14.39 15 27 H 0.14 1.96 8.08 -2.39 -0.02 1.94 15 28 H 0.16 1.47 8.14 -2.39 -0.02 1.45 15 Total: -1.00 -70.06 265.67 1.07 -69.00 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.22 Total: 15.17 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 2.67 Total: -47.78 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -0.81 Total: -91.67 kcal Atomic # 8 Polarization: -107.67 SS G_CDS: -4.14 Total: -111.81 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 1.53 Total: -8.00 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.82 Total: 42.82 kcal Atomic # 16 Polarization: 132.51 SS G_CDS: -0.24 Total: 132.27 kcal Total: -70.06 1.07 -69.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689194333.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.631 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds