Wall clock time and date at job start Mon Mar 30 2020 04:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47111 * 269.99874 * 3 2 1 5 5 H 1.48500 * 109.46939 * 29.99406 * 3 2 1 6 6 H 1.48496 * 109.47494 * 149.99720 * 3 2 1 7 7 C 1.37877 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99917 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00064 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40232 * 293.53487 * 9 7 2 11 11 O 1.42095 * 106.40462 * 66.45552 * 9 7 2 12 12 N 1.65610 * 107.21633 * 179.97438 * 9 7 2 13 13 C 1.46496 * 120.00031 * 64.99823 * 12 9 7 14 14 C 1.52996 * 109.47238 * 165.49442 * 13 12 9 15 15 C 1.53001 * 115.55243 * 294.66545 * 14 13 12 16 16 F 1.39896 * 109.47129 * 65.31448 * 15 14 13 17 17 F 1.39897 * 109.47350 * 185.31819 * 15 14 13 18 18 C 1.53002 * 117.49812 * 148.99538 * 14 13 12 19 19 C 1.53002 * 117.49700 * 80.33515 * 14 13 12 20 20 H 0.96999 * 119.99767 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99691 * 244.99386 * 12 9 7 22 22 H 1.09000 * 109.47414 * 285.50234 * 13 12 9 23 23 H 1.09006 * 109.46844 * 45.49794 * 13 12 9 24 24 H 1.09004 * 109.47003 * 305.31965 * 15 14 13 25 25 H 1.08998 * 117.49650 * 359.97438 * 18 14 13 26 26 H 1.09000 * 117.49807 * 145.02521 * 18 14 13 27 27 H 1.09004 * 117.49736 * 214.98127 * 19 14 13 28 28 H 1.08994 * 117.49589 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1683 -0.6488 -1.2491 11 8 4.1674 -0.6503 1.2503 12 7 4.2568 -2.7758 0.0000 13 6 3.9619 -3.6340 -1.1501 14 6 4.8117 -4.9037 -1.0703 15 6 6.3220 -4.6963 -1.2007 16 9 6.7877 -3.9594 -0.1065 17 9 6.9624 -5.9397 -1.2321 18 6 4.2215 -6.1869 -1.6584 19 6 4.3295 -6.0192 -0.1407 20 1 -0.4850 0.8401 -0.0004 21 1 4.7393 -3.1341 0.7614 22 1 2.9056 -3.9025 -1.1417 23 1 4.1935 -3.0991 -2.0713 24 1 6.5361 -4.1539 -2.1216 25 1 3.2276 -6.1266 -2.1018 26 1 4.9092 -6.8836 -2.1378 27 1 5.0882 -6.6055 0.3777 28 1 3.4066 -5.8485 0.4136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697877848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:41 Heat of formation + Delta-G solvation = -187.064431 kcal Electronic energy + Delta-G solvation = -17640.508634 eV Core-core repulsion = 14260.776524 eV Total energy + Delta-G solvation = -3379.732109 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.053 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.91823 -47.92620 -39.14752 -37.65498 -36.47841 -35.21244 -34.94023 -28.64962 -28.54333 -26.55706 -23.42812 -21.33955 -20.81232 -19.43407 -18.66865 -18.34513 -18.05266 -17.95666 -17.08381 -16.59234 -15.81728 -15.47240 -15.13725 -15.03975 -14.78419 -14.63888 -14.31721 -14.08817 -13.68101 -13.43142 -13.20785 -12.88068 -12.69366 -12.55700 -12.38994 -12.05936 -11.83037 -11.37816 -11.32117 -11.27722 -11.10420 -10.22933 -8.95878 -7.51470 0.15359 1.06325 1.15304 1.23284 1.90202 2.36603 2.44181 2.68472 2.86115 3.30381 3.32816 3.39992 3.58744 3.81322 4.17326 4.23113 4.32998 4.53287 4.68960 4.75811 4.83316 4.98996 5.04102 5.22629 5.39540 6.02139 6.26719 6.55071 8.21386 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.040060 B = 0.007082 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.778809 B = 3952.534137 C = 4332.013520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.110 3.890 3 Si 0.823 3.177 4 H -0.237 1.237 5 H -0.222 1.222 6 H -0.231 1.231 7 C -1.035 5.035 8 H 0.110 0.890 9 S 2.699 3.301 10 O -1.028 7.028 11 O -1.032 7.032 12 N -1.110 6.110 13 C 0.158 3.842 14 C -0.219 4.219 15 C 0.294 3.706 16 F -0.214 7.214 17 F -0.205 7.205 18 C -0.120 4.120 19 C -0.158 4.158 20 H 0.291 0.709 21 H 0.418 0.582 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -11.840 -4.090 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.107 4.107 3 Si 0.640 3.360 4 H -0.160 1.160 5 H -0.144 1.144 6 H -0.154 1.154 7 C -1.168 5.168 8 H 0.128 0.872 9 S 2.799 3.201 10 O -1.017 7.017 11 O -1.023 7.023 12 N -0.871 5.871 13 C 0.033 3.967 14 C -0.221 4.221 15 C 0.240 3.760 16 F -0.196 7.196 17 F -0.187 7.187 18 C -0.158 4.158 19 C -0.195 4.195 20 H 0.101 0.899 21 H 0.253 0.747 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.156 0.844 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.124 0.876 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.659 -10.944 -4.227 14.581 hybrid contribution -0.390 0.355 0.611 0.807 sum 8.269 -10.589 -3.616 13.913 Atomic orbital electron populations 1.70006 1.07392 1.30439 1.40478 1.25125 0.95586 1.01358 0.88636 0.87515 0.82805 0.83002 0.82643 1.16023 1.14441 1.15407 1.30953 1.17852 1.01756 1.66227 0.87151 1.00452 0.75756 0.71588 0.72314 1.93369 1.84714 1.77446 1.46196 1.93435 1.85315 1.77523 1.45991 1.55050 1.73804 1.29927 1.28323 1.20769 0.98804 0.88785 0.88373 1.22588 0.93177 0.92906 1.13450 1.21405 0.88150 0.77113 0.89287 1.92951 1.90039 1.77549 1.59040 1.92941 1.83559 1.45065 1.97101 1.23233 1.03480 0.93395 0.95661 1.23173 1.03745 0.98322 0.94284 0.89863 0.74690 0.90007 0.89621 0.84383 0.86008 0.86025 0.87555 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.71 13.96 21.45 0.30 -48.41 15 2 C 0.11 6.23 5.47 84.65 0.46 6.69 15 3 Si 0.82 40.83 26.54 68.60 1.82 42.65 15 4 H -0.24 -11.32 7.11 99.48 0.71 -10.62 15 5 H -0.22 -9.77 7.11 99.48 0.71 -9.06 15 6 H -0.23 -11.90 5.61 99.48 0.56 -11.35 15 7 C -1.04 -56.84 10.26 67.73 0.69 -56.15 15 8 H 0.11 6.10 8.06 -2.91 -0.02 6.08 15 9 S 2.70 131.67 4.24 -56.49 -0.24 131.43 15 10 O -1.03 -52.84 16.31 -128.00 -2.09 -54.93 15 11 O -1.03 -55.36 16.02 -128.00 -2.05 -57.41 15 12 N -1.11 -40.68 5.50 -187.50 -1.03 -41.71 15 13 C 0.16 4.67 6.06 86.38 0.52 5.19 15 14 C -0.22 -4.89 1.97 -52.18 -0.10 -4.99 15 15 C 0.29 6.64 5.31 71.98 0.38 7.02 15 16 F -0.21 -6.13 15.85 44.97 0.71 -5.42 15 17 F -0.21 -4.49 15.92 44.97 0.72 -3.77 15 18 C -0.12 -1.94 9.64 30.62 0.30 -1.64 15 19 C -0.16 -3.10 9.71 30.62 0.30 -2.80 15 20 H 0.29 14.99 8.31 -92.71 -0.77 14.22 15 21 H 0.42 14.00 7.69 -96.74 -0.74 13.26 15 22 H 0.08 2.33 8.09 -2.39 -0.02 2.31 15 23 H 0.09 2.51 7.76 -2.38 -0.02 2.49 15 24 H 0.14 2.50 8.14 -2.38 -0.02 2.48 15 25 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.12 1.61 7.63 -2.39 -0.02 1.59 15 27 H 0.11 1.98 7.94 -2.39 -0.02 1.96 15 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 Total: -1.00 -68.08 262.48 0.99 -67.08 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.30 Total: 17.16 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 2.55 Total: -46.68 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -0.73 Total: -90.12 kcal Atomic # 8 Polarization: -108.20 SS G_CDS: -4.14 Total: -112.34 kcal Atomic # 9 Polarization: -10.61 SS G_CDS: 1.43 Total: -9.19 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.82 Total: 42.65 kcal Atomic # 16 Polarization: 131.67 SS G_CDS: -0.24 Total: 131.43 kcal Total: -68.08 0.99 -67.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697877848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.980 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds