Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00119 * 2 1 4 4 C 1.46900 * 111.00506 * 123.95771 * 2 1 3 5 5 C 1.53002 * 109.47027 * 66.04502 * 4 2 1 6 6 C 1.52998 * 109.47335 * 180.02562 * 5 4 2 7 7 H 1.09006 * 110.87112 * 308.84734 * 6 5 4 8 8 C 1.55138 * 111.02228 * 72.71066 * 6 5 4 9 9 C 1.54318 * 103.01792 * 153.76039 * 8 6 5 10 10 N 1.47446 * 107.23303 * 337.71992 * 9 8 6 11 11 C 1.46897 * 110.99737 * 236.74038 * 10 9 8 12 12 C 1.53004 * 109.47085 * 290.12313 * 11 10 9 13 13 C 1.53005 * 109.46956 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00151 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99657 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46959 * 60.00221 * 18 16 14 20 20 H 1.48504 * 109.46796 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46898 * 300.00290 * 18 16 14 22 22 C 1.47840 * 108.56768 * 359.00691 * 10 9 8 23 23 H 1.08997 * 109.47117 * 296.04269 * 1 2 3 24 24 H 1.08995 * 109.47129 * 56.04596 * 1 2 3 25 25 H 1.09001 * 109.46990 * 176.04037 * 1 2 3 26 26 H 1.09002 * 109.47796 * 183.95316 * 3 2 1 27 27 H 1.09004 * 109.47532 * 303.95981 * 3 2 1 28 28 H 1.09002 * 109.46777 * 63.95422 * 3 2 1 29 29 H 1.08995 * 109.46609 * 306.04963 * 4 2 1 30 30 H 1.08995 * 109.47178 * 186.04795 * 4 2 1 31 31 H 1.08997 * 109.46975 * 59.99955 * 5 4 2 32 32 H 1.09005 * 109.47161 * 300.00677 * 5 4 2 33 33 H 1.09003 * 110.70420 * 35.38418 * 8 6 5 34 34 H 1.09002 * 110.71153 * 272.14407 * 8 6 5 35 35 H 1.08996 * 109.89415 * 218.31078 * 9 8 6 36 36 H 1.09001 * 109.88767 * 97.12302 * 9 8 6 37 37 H 1.08995 * 109.47403 * 50.12410 * 11 10 9 38 38 H 1.09000 * 109.46981 * 170.12871 * 11 10 9 39 39 H 1.08998 * 109.47567 * 300.00174 * 12 11 10 40 40 H 1.09000 * 109.46756 * 60.00420 * 12 11 10 41 41 H 1.08998 * 109.46993 * 300.00364 * 13 12 11 42 42 H 1.09002 * 109.46860 * 60.00080 * 13 12 11 43 43 H 0.97003 * 119.99704 * 179.97438 * 17 16 14 44 44 H 1.08998 * 110.37675 * 142.92257 * 22 10 9 45 45 H 1.08996 * 110.37806 * 265.27089 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1794 -3.0405 2.1552 7 1 3.2374 -2.8289 2.3099 8 6 1.3618 -2.7567 3.4427 9 6 1.5600 -4.0436 4.2710 10 7 1.9265 -5.1172 3.3292 11 6 0.9917 -6.2459 3.4280 12 6 1.1969 -6.9626 4.7642 13 6 0.2236 -8.1387 4.8668 14 6 0.4254 -8.8443 6.1830 15 1 1.1727 -8.4891 6.8771 16 6 -0.3449 -9.9426 6.5017 17 7 -1.2552 -10.3747 5.6566 18 14 -0.0953 -10.8167 8.1336 19 1 -0.3466 -9.8671 9.2472 20 1 -1.0399 -11.9583 8.2331 21 1 1.2993 -11.3200 8.2173 22 6 1.9397 -4.5585 1.9605 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0710 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9233 29 1 1.5611 -0.3874 2.0627 30 1 3.0797 -0.6611 1.1755 31 1 2.0658 -2.6213 0.0449 32 1 0.5472 -2.3476 0.9321 33 1 0.3081 -2.6095 3.2056 34 1 1.7633 -1.8923 3.9716 35 1 0.6334 -4.3008 4.7841 36 1 2.3601 -3.8979 4.9968 37 1 -0.0319 -5.8764 3.3675 38 1 1.1755 -6.9426 2.6101 39 1 2.2205 -7.3323 4.8248 40 1 1.0131 -6.2660 5.5821 41 1 -0.8001 -7.7695 4.8060 42 1 0.4079 -8.8352 4.0488 43 1 -1.7969 -11.1477 5.8806 44 1 2.7494 -4.9988 1.3786 45 1 0.9815 -4.7315 1.4707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701503984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = -15.780593 kcal Electronic energy + Delta-G solvation = -18786.228511 eV Core-core repulsion = 16030.618430 eV Total energy + Delta-G solvation = -2755.610080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29748 -37.71581 -34.66325 -33.04311 -31.30864 -29.53627 -28.25930 -27.90177 -26.06172 -24.08330 -22.93046 -21.55862 -20.62327 -20.42188 -19.35383 -16.33273 -16.30688 -15.81620 -15.63968 -15.13301 -14.77368 -14.38061 -14.17098 -13.77381 -13.40793 -13.18305 -12.72556 -12.49319 -12.34247 -12.20133 -12.13878 -11.99301 -11.86450 -11.38290 -11.26858 -10.94287 -10.81431 -10.76641 -10.64367 -10.52399 -10.48476 -10.39382 -9.59851 -9.27069 -9.01965 -8.69247 -8.30250 -7.98847 -5.95780 -3.97631 3.36299 3.40093 3.43123 3.60711 4.25576 4.49093 4.52107 4.61496 4.80058 4.85502 4.95431 5.02719 5.09157 5.23555 5.32775 5.37795 5.39795 5.42177 5.45618 5.51098 5.54030 5.65330 5.71184 5.79075 5.82479 5.87824 5.93439 6.01165 6.13639 6.22602 6.33324 6.38551 6.68480 6.70506 6.76385 6.84584 7.17426 7.34389 7.48549 7.73175 7.88707 8.05095 8.48801 9.09440 9.65972 11.15705 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.057426 B = 0.002843 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.471209 B = 9847.130989 C = 9949.165384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.055 3.945 5 C -0.105 4.105 6 C -0.096 4.096 7 H 0.083 0.917 8 C -0.137 4.137 9 C 0.042 3.958 10 N -0.531 5.531 11 C 0.052 3.948 12 C -0.103 4.103 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.047 3.953 23 H 0.025 0.975 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.076 0.924 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 21.786 -10.727 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.115 4.115 7 H 0.101 0.899 8 C -0.175 4.175 9 C -0.086 4.086 10 N -0.255 5.255 11 C -0.076 4.076 12 C -0.141 4.141 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.081 4.081 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.751 21.217 -11.053 24.604 hybrid contribution -1.100 0.138 1.463 1.835 sum 4.651 21.354 -9.590 23.866 Atomic orbital electron populations 1.22443 0.87417 1.02590 1.00324 1.61994 1.08086 1.13695 1.43544 1.22378 1.00779 0.88893 1.00384 1.22177 1.00088 0.93930 0.91032 1.21547 1.01028 0.93437 0.98336 1.22296 1.00193 0.94779 0.94260 0.89888 1.22879 0.99883 0.98417 0.96349 1.22819 1.00530 0.89595 0.95665 1.63627 1.50394 1.07679 1.03787 1.22458 0.92451 0.92051 1.00599 1.21625 1.01071 0.98044 0.93368 1.19074 0.93753 0.91849 0.96916 1.21226 1.19142 1.12385 1.02865 0.92741 1.25035 0.95282 0.97250 0.96996 1.69961 1.22553 1.25414 1.35758 0.86655 0.77966 0.79132 0.84228 1.20289 1.21332 1.20216 1.23045 1.00559 0.93038 0.91425 0.95682 0.91542 0.90931 0.91351 0.91444 0.95762 0.94694 0.90788 0.90873 0.91872 0.91789 0.91290 0.92311 0.90871 0.95323 0.91408 0.92669 0.93617 0.96922 0.96640 0.93016 0.90530 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.55 -4.76 5.02 -251.27 -1.26 -6.02 16 3 C 0.02 0.17 9.57 60.06 0.57 0.74 16 4 C 0.06 0.47 4.86 -3.82 -0.02 0.46 16 5 C -0.11 -0.96 4.65 -26.73 -0.12 -1.09 16 6 C -0.10 -1.00 3.00 -88.48 -0.27 -1.27 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 8 C -0.14 -1.51 5.89 -24.91 -0.15 -1.66 16 9 C 0.04 0.59 6.21 -2.83 -0.02 0.57 16 10 N -0.53 -8.35 5.16 -231.26 -1.19 -9.55 16 11 C 0.05 0.95 4.54 -3.82 -0.02 0.93 16 12 C -0.10 -2.24 5.18 -26.73 -0.14 -2.37 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.05 0.61 6.15 -2.30 -0.01 0.59 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.07 0.58 6.47 -51.93 -0.34 0.24 16 26 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.03 0.31 7.73 -51.93 -0.40 -0.09 16 30 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 33 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.90 6.91 -51.93 -0.36 0.54 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.53 7.96 -51.93 -0.41 0.11 16 38 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.57 7.70 -51.93 -0.40 0.17 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -30.71 349.42 -10.53 -41.24 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -8.90 Total: -5.43 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.16 Total: -15.81 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -1.72 Total: -42.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.71 -10.53 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.458 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds