Wall clock time and date at job start Mon Mar 30 2020 04:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00119 * 2 1 4 4 C 1.46900 * 111.00506 * 123.95771 * 2 1 3 5 5 C 1.53002 * 109.47027 * 66.04502 * 4 2 1 6 6 C 1.52998 * 109.47335 * 180.02562 * 5 4 2 7 7 H 1.09006 * 110.87112 * 308.84734 * 6 5 4 8 8 C 1.55138 * 111.02228 * 72.71066 * 6 5 4 9 9 C 1.54318 * 103.01792 * 153.76039 * 8 6 5 10 10 N 1.47446 * 107.23303 * 337.71992 * 9 8 6 11 11 C 1.46897 * 110.99737 * 236.74038 * 10 9 8 12 12 C 1.53004 * 109.47085 * 290.12313 * 11 10 9 13 13 C 1.53005 * 109.46956 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00151 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00003 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99657 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46959 * 60.00221 * 18 16 14 20 20 H 1.48504 * 109.46796 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46898 * 300.00290 * 18 16 14 22 22 C 1.47840 * 108.56768 * 359.00691 * 10 9 8 23 23 H 1.08997 * 109.47117 * 296.04269 * 1 2 3 24 24 H 1.08995 * 109.47129 * 56.04596 * 1 2 3 25 25 H 1.09001 * 109.46990 * 176.04037 * 1 2 3 26 26 H 1.09002 * 109.47796 * 183.95316 * 3 2 1 27 27 H 1.09004 * 109.47532 * 303.95981 * 3 2 1 28 28 H 1.09002 * 109.46777 * 63.95422 * 3 2 1 29 29 H 1.08995 * 109.46609 * 306.04963 * 4 2 1 30 30 H 1.08995 * 109.47178 * 186.04795 * 4 2 1 31 31 H 1.08997 * 109.46975 * 59.99955 * 5 4 2 32 32 H 1.09005 * 109.47161 * 300.00677 * 5 4 2 33 33 H 1.09003 * 110.70420 * 35.38418 * 8 6 5 34 34 H 1.09002 * 110.71153 * 272.14407 * 8 6 5 35 35 H 1.08996 * 109.89415 * 218.31078 * 9 8 6 36 36 H 1.09001 * 109.88767 * 97.12302 * 9 8 6 37 37 H 1.08995 * 109.47403 * 50.12410 * 11 10 9 38 38 H 1.09000 * 109.46981 * 170.12871 * 11 10 9 39 39 H 1.08998 * 109.47567 * 300.00174 * 12 11 10 40 40 H 1.09000 * 109.46756 * 60.00420 * 12 11 10 41 41 H 1.08998 * 109.46993 * 300.00364 * 13 12 11 42 42 H 1.09002 * 109.46860 * 60.00080 * 13 12 11 43 43 H 0.97003 * 119.99704 * 179.97438 * 17 16 14 44 44 H 1.08998 * 110.37675 * 142.92257 * 22 10 9 45 45 H 1.08996 * 110.37806 * 265.27089 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1794 -3.0405 2.1552 7 1 3.2374 -2.8289 2.3099 8 6 1.3618 -2.7567 3.4427 9 6 1.5600 -4.0436 4.2710 10 7 1.9265 -5.1172 3.3292 11 6 0.9917 -6.2459 3.4280 12 6 1.1969 -6.9626 4.7642 13 6 0.2236 -8.1387 4.8668 14 6 0.4254 -8.8443 6.1830 15 1 1.1727 -8.4891 6.8771 16 6 -0.3449 -9.9426 6.5017 17 7 -1.2552 -10.3747 5.6566 18 14 -0.0953 -10.8167 8.1336 19 1 -0.3466 -9.8671 9.2472 20 1 -1.0399 -11.9583 8.2331 21 1 1.2993 -11.3200 8.2173 22 6 1.9397 -4.5585 1.9605 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0710 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9233 29 1 1.5611 -0.3874 2.0627 30 1 3.0797 -0.6611 1.1755 31 1 2.0658 -2.6213 0.0449 32 1 0.5472 -2.3476 0.9321 33 1 0.3081 -2.6095 3.2056 34 1 1.7633 -1.8923 3.9716 35 1 0.6334 -4.3008 4.7841 36 1 2.3601 -3.8979 4.9968 37 1 -0.0319 -5.8764 3.3675 38 1 1.1755 -6.9426 2.6101 39 1 2.2205 -7.3323 4.8248 40 1 1.0131 -6.2660 5.5821 41 1 -0.8001 -7.7695 4.8060 42 1 0.4079 -8.8352 4.0488 43 1 -1.7969 -11.1477 5.8806 44 1 2.7494 -4.9988 1.3786 45 1 0.9815 -4.7315 1.4707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701503984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:43 Heat of formation + Delta-G solvation = -35.403609 kcal Electronic energy + Delta-G solvation = -18787.079429 eV Core-core repulsion = 16030.618430 eV Total energy + Delta-G solvation = -2756.460998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33964 -38.45642 -36.28568 -34.71663 -32.89220 -30.74833 -29.35362 -28.47926 -27.70993 -25.14934 -24.40700 -22.66587 -21.85950 -21.52080 -20.61888 -18.47736 -17.32523 -16.81218 -16.49181 -16.35025 -15.96912 -15.76942 -15.29443 -14.90075 -14.66939 -14.27953 -14.12148 -13.72177 -13.53716 -13.26545 -13.19310 -12.96769 -12.85110 -12.62913 -12.56866 -12.51164 -12.30652 -12.20520 -11.87201 -11.68805 -11.59627 -11.47202 -11.37449 -11.30399 -11.05473 -10.55780 -9.30539 -9.24408 -8.20833 -6.32205 1.39131 1.42842 1.50799 2.40469 2.93345 3.11830 3.13594 3.63085 3.73360 3.92805 4.11772 4.20947 4.26278 4.33241 4.39368 4.41019 4.48627 4.58428 4.60925 4.70930 4.71445 4.72364 4.76225 4.79614 4.89510 4.97688 4.99042 5.01963 5.02861 5.06569 5.07338 5.18575 5.24857 5.31713 5.46207 5.50801 5.72596 5.84318 6.08389 6.09719 6.11991 6.12842 6.27518 6.84066 7.36855 8.91004 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.057426 B = 0.002843 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.471209 B = 9847.130989 C = 9949.165384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.059 3.941 5 C -0.096 4.096 6 C -0.083 4.083 7 H 0.090 0.910 8 C -0.128 4.128 9 C 0.036 3.964 10 N -0.541 5.541 11 C 0.065 3.935 12 C -0.087 4.087 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.266 1.266 22 C 0.043 3.957 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.046 0.954 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 23.062 -10.335 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.134 4.134 6 C -0.103 4.103 7 H 0.109 0.891 8 C -0.166 4.166 9 C -0.091 4.091 10 N -0.265 5.265 11 C -0.064 4.064 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.084 4.084 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.682 22.516 -10.669 25.796 hybrid contribution -1.392 -0.248 1.296 1.918 sum 5.289 22.268 -9.373 24.732 Atomic orbital electron populations 1.22452 0.87145 1.02482 1.00706 1.62001 1.08497 1.14660 1.43586 1.22418 1.01115 0.88114 1.00810 1.22120 1.00411 0.93264 0.91075 1.21438 1.00626 0.93834 0.97540 1.22214 1.00606 0.92983 0.94450 0.89121 1.22826 1.00201 0.97419 0.96161 1.22882 0.99794 0.90597 0.95852 1.63568 1.49326 1.07826 1.05778 1.22162 0.92917 0.92956 0.98315 1.21364 0.99115 0.96445 0.95563 1.18970 0.93708 0.93030 0.95444 1.21655 1.19538 1.13166 1.03870 0.92336 1.26018 0.94731 0.98035 1.01175 1.70095 1.23377 1.25978 1.37953 0.85474 0.78342 0.77923 0.79160 1.19118 1.20661 1.19135 1.23141 1.00695 0.94800 0.89781 0.95693 0.90719 0.91378 0.90841 0.90709 0.95594 0.94736 0.90238 0.90984 0.92294 0.91784 0.89338 0.93951 0.90575 0.95784 0.91713 0.93127 0.93478 0.99250 0.99021 0.92716 0.90014 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.32 127.69 1.19 1.48 16 2 N -0.56 -8.70 5.02 -948.87 -4.76 -13.47 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.06 0.88 4.86 86.30 0.42 1.30 16 5 C -0.10 -1.58 4.65 30.59 0.14 -1.44 16 6 C -0.08 -1.57 3.00 -9.41 -0.03 -1.60 16 7 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 8 C -0.13 -2.58 5.89 31.77 0.19 -2.39 16 9 C 0.04 0.99 6.21 86.65 0.54 1.53 16 10 N -0.54 -16.67 5.16 -885.57 -4.57 -21.24 16 11 C 0.06 2.39 4.54 86.31 0.39 2.78 16 12 C -0.09 -3.83 5.18 30.60 0.16 -3.67 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 17 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 18 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.04 1.06 6.15 86.77 0.53 1.60 16 23 H 0.02 0.34 8.14 -2.39 -0.02 0.33 16 24 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 25 H 0.07 1.00 6.47 -2.39 -0.02 0.99 16 26 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 28 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.03 0.52 7.73 -2.39 -0.02 0.50 16 30 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.04 6.38 -2.38 -0.02 1.02 16 33 H 0.06 1.31 7.92 -2.39 -0.02 1.29 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.29 6.91 -2.39 -0.02 1.27 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 38 H 0.06 2.41 8.07 -2.39 -0.02 2.39 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.04 1.05 7.70 -2.39 -0.02 1.03 16 Total: -1.00 -65.57 349.42 -0.52 -66.09 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.90 Total: 8.13 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 5.60 Total: -28.91 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -9.04 Total: -92.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.57 -0.52 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds