Wall clock time and date at job start Mon Mar 30 2020 04:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86807 * 119.99988 * 2 1 4 4 H 1.48493 * 109.46979 * 240.00292 * 3 2 1 5 5 H 1.48505 * 109.46700 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47337 * 119.99952 * 3 2 1 7 7 C 1.38951 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99636 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00504 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99768 * 179.97438 * 10 9 7 13 13 S 1.81002 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00182 * 180.02562 * 13 12 10 15 15 N 1.32555 * 119.19223 * 0.02562 * 14 13 12 16 16 C 1.32414 * 120.87791 * 179.97438 * 15 14 13 17 17 C 1.38258 * 119.27335 * 0.02562 * 16 15 14 18 18 C 1.39413 * 118.51945 * 0.02562 * 17 16 15 19 19 O 1.35509 * 120.46035 * 180.02562 * 18 17 16 20 20 N 1.32522 * 119.19334 * 179.73402 * 14 13 12 21 21 H 0.96995 * 120.00007 * 359.97438 * 1 2 3 22 22 H 0.96993 * 119.99990 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.46867 * 60.00428 * 12 10 9 24 24 H 1.09000 * 109.47235 * 300.00468 * 12 10 9 25 25 H 1.07998 * 120.36312 * 179.97438 * 16 15 14 26 26 H 1.07998 * 120.73891 * 180.02562 * 17 16 15 27 27 H 0.96705 * 114.00412 * 89.99526 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 16 2.4202 -6.2386 0.0017 14 6 1.3001 -7.5988 0.0016 15 7 -0.0042 -7.3624 0.0006 16 6 -0.8756 -8.3593 -0.0001 17 6 -0.4124 -9.6620 0.0008 18 6 0.9647 -9.8789 0.0029 19 8 1.4616 -11.1396 0.0033 20 7 1.7823 -8.8332 -0.0034 21 1 -0.4850 0.8400 0.0004 22 1 0.3535 -2.3906 0.0005 23 1 0.6170 -4.9208 -0.8887 24 1 0.6176 -4.9204 0.8913 25 1 -1.9365 -8.1571 -0.0005 26 1 -1.1021 -10.4931 -0.0001 27 1 1.6073 -11.5053 -0.8799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716007663.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:30 Heat of formation + Delta-G solvation = -26.220372 kcal Electronic energy + Delta-G solvation = -15415.517266 eV Core-core repulsion = 12493.449064 eV Total energy + Delta-G solvation = -2922.068201 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04722 -38.21096 -37.81232 -34.09163 -33.40042 -31.71317 -31.37133 -29.25367 -25.01233 -24.54765 -24.22954 -19.90600 -19.45242 -18.25871 -17.82270 -17.08300 -16.02450 -15.98215 -15.50880 -14.79725 -14.56200 -14.40162 -14.10653 -14.01939 -13.29732 -12.55287 -12.35814 -12.07325 -11.60509 -11.09210 -10.93930 -10.85256 -10.48987 -10.30356 -10.20617 -10.12151 -9.61366 -9.45321 -8.65229 -8.10265 -7.56807 -6.50975 -3.92693 0.57227 0.84985 1.32947 2.36970 3.15100 3.17181 3.22572 3.27188 3.51268 3.72851 4.10905 4.21086 4.52175 4.81224 4.84499 4.93963 5.14478 5.31843 5.64278 5.80761 5.91508 6.12442 6.72356 7.09015 7.46961 7.73913 7.91641 8.44981 9.04883 9.38486 9.87420 10.65919 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.060462 B = 0.003993 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.988101 B = 7011.229676 C = 7456.515827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.449 3.551 11 O -0.584 6.584 12 C -0.135 4.135 13 S 0.103 5.897 14 C 0.304 3.696 15 N -0.533 5.533 16 C 0.178 3.822 17 C -0.265 4.265 18 C 0.373 3.627 19 O -0.477 6.477 20 N -0.527 5.527 21 H 0.274 0.726 22 H 0.396 0.604 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.174 0.826 26 H 0.151 0.849 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -16.733 -1.730 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.233 3.767 11 O -0.470 6.470 12 C -0.288 4.288 13 S 0.339 5.661 14 C -0.070 4.070 15 N -0.253 5.253 16 C 0.010 3.990 17 C -0.293 4.293 18 C 0.182 3.818 19 O -0.284 6.284 20 N -0.255 5.255 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.192 0.808 26 H 0.168 0.832 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.479 -15.663 -1.140 15.899 hybrid contribution -2.346 -0.237 -0.443 2.399 sum -4.825 -15.900 -1.583 16.691 Atomic orbital electron populations 1.69603 1.06008 1.28601 1.49411 1.25322 0.95683 0.99913 0.96789 0.85860 0.78768 0.80057 0.79227 1.19740 1.20872 1.19727 1.19713 0.93500 0.81880 1.48239 0.87621 1.41734 1.09414 1.04170 1.62850 1.18975 0.87872 0.83882 0.85974 1.90570 1.13263 1.86487 1.56687 1.23736 1.01744 0.95500 1.07805 1.86728 1.02805 0.89091 1.87434 1.25743 0.92692 0.95618 0.92919 1.68970 1.02174 1.36478 1.17695 1.23181 1.00292 0.87521 0.87992 1.22762 0.96197 1.00209 1.10151 1.19426 0.87772 0.84831 0.89789 1.84711 1.86262 1.23169 1.34305 1.68017 1.40974 0.98540 1.17959 0.91573 0.77046 0.87204 0.87224 0.80850 0.83171 0.73327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 15 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 15 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 15 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 15 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 15 10 C 0.45 10.57 7.80 -10.98 -0.09 10.49 15 11 O -0.58 -15.71 15.44 5.54 0.09 -15.63 15 12 C -0.14 -2.48 5.29 36.01 0.19 -2.29 15 13 S 0.10 1.85 21.38 -107.50 -2.30 -0.45 15 14 C 0.30 4.89 7.85 -90.87 -0.71 4.18 15 15 N -0.53 -7.67 9.13 -13.51 -0.12 -7.79 15 16 C 0.18 1.88 11.29 -17.29 -0.20 1.68 15 17 C -0.26 -2.54 10.12 -39.14 -0.40 -2.93 15 18 C 0.37 4.52 7.83 -16.72 -0.13 4.38 15 19 O -0.48 -4.57 13.57 -18.22 -0.25 -4.82 15 20 N -0.53 -8.16 10.42 -13.50 -0.14 -8.30 15 21 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 22 H 0.40 9.41 7.90 -40.82 -0.32 9.08 15 23 H 0.11 1.84 8.11 -51.91 -0.42 1.42 15 24 H 0.11 1.86 8.11 -51.92 -0.42 1.44 15 25 H 0.17 1.16 8.06 -52.49 -0.42 0.73 15 26 H 0.15 0.93 8.06 -52.49 -0.42 0.50 15 27 H 0.41 1.68 9.06 45.56 0.41 2.10 15 LS Contribution 269.28 15.07 4.06 4.06 Total: -1.00 -33.20 269.28 -5.70 -38.90 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -1.11 Total: 7.64 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.57 Total: 7.63 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.40 Total: -52.93 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.16 Total: -20.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.30 Total: -0.45 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.20 -5.70 -38.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716007663.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.681 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds