Wall clock time and date at job start Mon Mar 30 2020 04:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 112.90410 * 2 1 4 4 S 1.65602 * 120.00090 * 311.24590 * 3 2 1 5 5 O 1.42098 * 106.40134 * 178.54020 * 4 3 2 6 6 O 1.42098 * 106.40301 * 311.46380 * 4 3 2 7 7 C 1.76210 * 107.21563 * 65.00273 * 4 3 2 8 8 H 1.07996 * 119.99624 * 0.02562 * 7 4 3 9 9 C 1.37876 * 119.99632 * 179.97438 * 7 4 3 10 10 N 1.31506 * 120.00483 * 0.02562 * 9 7 4 11 11 Si 1.86799 * 119.99559 * 180.02562 * 9 7 4 12 12 H 1.48505 * 109.47313 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47268 * 119.99888 * 11 9 7 14 14 H 1.48498 * 109.47261 * 239.99942 * 11 9 7 15 15 C 1.53778 * 113.61263 * 131.24599 * 2 1 3 16 16 C 1.53787 * 87.08035 * 139.98349 * 15 2 1 17 17 F 1.39898 * 113.61126 * 89.11415 * 16 15 2 18 18 F 1.39893 * 113.61601 * 220.02107 * 16 15 2 19 19 C 1.53778 * 113.61526 * 228.74685 * 2 1 3 20 20 H 1.08997 * 109.47626 * 288.74746 * 1 2 3 21 21 H 1.08994 * 109.47447 * 48.75272 * 1 2 3 22 22 H 1.09003 * 109.46736 * 168.75236 * 1 2 3 23 23 H 0.97005 * 120.00230 * 131.25402 * 3 2 1 24 24 H 0.96998 * 120.00194 * 179.97438 * 10 9 7 25 25 H 1.08998 * 113.61879 * 25.43831 * 15 2 1 26 26 H 1.08999 * 113.61887 * 254.52938 * 15 2 1 27 27 H 1.08993 * 113.61229 * 105.47191 * 19 2 1 28 28 H 1.09000 * 113.61263 * 334.56841 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1002 1.3495 0.0000 4 16 1.5515 2.4802 -1.0783 5 8 2.2676 3.6766 -0.8044 6 8 1.5477 1.8510 -2.3524 7 6 -0.1336 2.8066 -0.6796 8 1 -0.6025 2.2920 0.1460 9 6 -0.8530 3.7197 -1.4210 10 7 -0.2819 4.3466 -2.4260 11 14 -2.6392 4.0661 -0.9978 12 1 -3.0420 3.2368 0.1664 13 1 -2.7982 5.5036 -0.6608 14 1 -3.4975 3.7330 -2.1628 15 6 2.1460 -0.9290 1.0594 16 6 3.1924 -1.3136 0.0001 17 9 4.3201 -0.4858 0.0001 18 9 3.5158 -2.6746 0.0001 19 6 2.1460 -0.9291 -1.0593 20 1 -0.3634 0.3303 0.9731 21 1 -0.3634 0.6775 -0.7726 22 1 -0.3633 -1.0080 -0.2005 23 1 2.7992 1.5807 0.6316 24 1 -0.7881 4.9887 -2.9478 25 1 1.4945 -1.7535 1.3491 26 1 2.5650 -0.3987 1.9146 27 1 2.5650 -0.3989 -1.9144 28 1 1.4945 -1.7536 -1.3489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720993565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:31 Heat of formation + Delta-G solvation = -170.538062 kcal Electronic energy + Delta-G solvation = -18121.942542 eV Core-core repulsion = 14742.927069 eV Total energy + Delta-G solvation = -3379.015472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.053 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.60914 -46.95202 -38.72538 -35.20919 -33.98533 -33.18217 -31.77305 -28.81631 -26.16841 -26.04746 -22.40438 -19.77925 -18.86063 -17.48066 -17.20696 -16.51400 -16.29888 -15.86225 -15.37236 -14.91333 -14.09799 -13.80784 -13.63035 -13.33058 -13.15946 -12.90503 -12.55622 -12.29830 -12.18417 -12.01782 -11.30957 -11.26885 -10.86344 -10.71324 -10.56397 -10.38074 -10.28645 -10.23675 -9.98866 -9.27105 -9.05582 -8.63551 -6.74510 -5.34488 2.26319 3.02434 3.11595 3.17163 3.65106 3.96898 4.00536 4.37998 4.39721 4.57927 4.60751 4.81381 5.49622 5.52943 5.57009 5.65800 5.74723 5.93239 6.08679 6.12031 6.29751 6.53258 6.73753 6.88091 7.27865 7.80877 7.93336 8.84348 10.19774 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.038365 B = 0.007904 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.647781 B = 3541.700298 C = 3913.694114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.178 3.822 3 N -1.116 6.116 4 S 2.714 3.286 5 O -1.006 7.006 6 O -1.001 7.001 7 C -1.021 5.021 8 H 0.112 0.888 9 C 0.133 3.867 10 N -0.843 5.843 11 Si 0.919 3.081 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.271 1.271 15 C -0.163 4.163 16 C 0.251 3.749 17 F -0.178 7.178 18 F -0.197 7.197 19 C -0.180 4.180 20 H 0.069 0.931 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.406 0.594 24 H 0.290 0.710 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -10.070 6.151 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 N -0.869 5.869 4 S 2.814 3.186 5 O -0.996 6.996 6 O -0.991 6.991 7 C -1.154 5.154 8 H 0.130 0.870 9 C -0.086 4.086 10 N -0.473 5.473 11 Si 0.743 3.257 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.203 4.203 16 C 0.214 3.786 17 F -0.159 7.159 18 F -0.178 7.178 19 C -0.220 4.220 20 H 0.088 0.912 21 H 0.127 0.873 22 H 0.085 0.915 23 H 0.238 0.762 24 H 0.101 0.899 25 H 0.138 0.862 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.864 -9.617 5.170 10.953 hybrid contribution -0.814 0.174 0.865 1.200 sum 0.050 -9.443 6.035 11.207 Atomic orbital electron populations 1.22537 0.91720 1.03926 1.05334 1.20402 0.94407 0.82533 0.93967 1.55953 1.52574 1.22157 1.56186 1.00532 0.75900 0.70561 0.71649 1.93380 1.75870 1.45347 1.85048 1.93359 1.88968 1.76717 1.40099 1.30791 1.21635 1.35773 1.27241 0.87022 1.24751 1.00706 0.91434 0.91660 1.69903 1.38808 1.22647 1.15903 0.86148 0.81263 0.78919 0.79345 1.18536 1.19707 1.19655 1.24465 0.96623 1.01166 0.98038 1.22161 0.82374 0.72177 1.01845 1.93007 1.54452 1.71125 1.97289 1.92971 1.94387 1.33086 1.97357 1.24768 0.96413 1.01378 0.99411 0.91232 0.87333 0.91469 0.76250 0.89911 0.86197 0.88580 0.87103 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 7.86 37.16 0.29 -2.45 15 2 C 0.18 2.86 1.28 -131.01 -0.17 2.69 15 3 N -1.12 -21.42 5.35 1.19 0.01 -21.41 15 4 S 2.71 69.17 4.67 -107.50 -0.50 68.67 15 5 O -1.01 -29.15 18.02 -57.17 -1.03 -30.18 15 6 O -1.00 -27.69 16.74 -57.17 -0.96 -28.64 15 7 C -1.02 -26.15 7.34 30.60 0.22 -25.92 15 8 H 0.11 2.54 5.98 -52.49 -0.31 2.23 15 9 C 0.13 3.52 5.46 -17.82 -0.10 3.43 15 10 N -0.84 -23.99 13.19 55.43 0.73 -23.26 15 11 Si 0.92 19.59 29.54 -169.99 -5.02 14.57 15 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 15 C -0.16 -2.03 7.12 -25.92 -0.18 -2.22 15 16 C 0.25 3.68 3.27 -25.91 -0.08 3.60 15 17 F -0.18 -2.95 16.92 2.25 0.04 -2.91 15 18 F -0.20 -2.84 17.41 2.25 0.04 -2.80 15 19 C -0.18 -2.80 6.98 -25.92 -0.18 -2.98 15 20 H 0.07 0.98 7.83 -51.93 -0.41 0.58 15 21 H 0.11 2.06 5.00 -51.93 -0.26 1.80 15 22 H 0.07 0.81 7.94 -51.93 -0.41 0.40 15 23 H 0.41 6.95 8.68 -34.47 -0.30 6.65 15 24 H 0.29 7.43 8.31 -40.82 -0.34 7.09 15 25 H 0.12 1.15 8.10 -51.93 -0.42 0.73 15 26 H 0.10 1.09 8.12 -51.93 -0.42 0.66 15 27 H 0.11 2.01 7.31 -51.93 -0.38 1.63 15 28 H 0.12 1.48 7.96 -51.93 -0.41 1.07 15 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -33.03 257.71 -5.47 -38.50 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.46 Total: 7.45 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -0.20 Total: -23.86 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.74 Total: -44.67 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -1.99 Total: -58.82 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.08 Total: -5.71 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 69.17 SS G_CDS: -0.50 Total: 68.67 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.03 -5.47 -38.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720993565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.039 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds