Wall clock time and date at job start Mon Mar 30 2020 04:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 112.90410 * 2 1 4 4 S 1.65602 * 120.00090 * 311.24590 * 3 2 1 5 5 O 1.42098 * 106.40134 * 178.54020 * 4 3 2 6 6 O 1.42098 * 106.40301 * 311.46380 * 4 3 2 7 7 C 1.76210 * 107.21563 * 65.00273 * 4 3 2 8 8 H 1.07996 * 119.99624 * 0.02562 * 7 4 3 9 9 C 1.37876 * 119.99632 * 179.97438 * 7 4 3 10 10 N 1.31506 * 120.00483 * 0.02562 * 9 7 4 11 11 Si 1.86799 * 119.99559 * 180.02562 * 9 7 4 12 12 H 1.48505 * 109.47313 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47268 * 119.99888 * 11 9 7 14 14 H 1.48498 * 109.47261 * 239.99942 * 11 9 7 15 15 C 1.53778 * 113.61263 * 131.24599 * 2 1 3 16 16 C 1.53787 * 87.08035 * 139.98349 * 15 2 1 17 17 F 1.39898 * 113.61126 * 89.11415 * 16 15 2 18 18 F 1.39893 * 113.61601 * 220.02107 * 16 15 2 19 19 C 1.53778 * 113.61526 * 228.74685 * 2 1 3 20 20 H 1.08997 * 109.47626 * 288.74746 * 1 2 3 21 21 H 1.08994 * 109.47447 * 48.75272 * 1 2 3 22 22 H 1.09003 * 109.46736 * 168.75236 * 1 2 3 23 23 H 0.97005 * 120.00230 * 131.25402 * 3 2 1 24 24 H 0.96998 * 120.00194 * 179.97438 * 10 9 7 25 25 H 1.08998 * 113.61879 * 25.43831 * 15 2 1 26 26 H 1.08999 * 113.61887 * 254.52938 * 15 2 1 27 27 H 1.08993 * 113.61229 * 105.47191 * 19 2 1 28 28 H 1.09000 * 113.61263 * 334.56841 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1002 1.3495 0.0000 4 16 1.5515 2.4802 -1.0783 5 8 2.2676 3.6766 -0.8044 6 8 1.5477 1.8510 -2.3524 7 6 -0.1336 2.8066 -0.6796 8 1 -0.6025 2.2920 0.1460 9 6 -0.8530 3.7197 -1.4210 10 7 -0.2819 4.3466 -2.4260 11 14 -2.6392 4.0661 -0.9978 12 1 -3.0420 3.2368 0.1664 13 1 -2.7982 5.5036 -0.6608 14 1 -3.4975 3.7330 -2.1628 15 6 2.1460 -0.9290 1.0594 16 6 3.1924 -1.3136 0.0001 17 9 4.3201 -0.4858 0.0001 18 9 3.5158 -2.6746 0.0001 19 6 2.1460 -0.9291 -1.0593 20 1 -0.3634 0.3303 0.9731 21 1 -0.3634 0.6775 -0.7726 22 1 -0.3633 -1.0080 -0.2005 23 1 2.7992 1.5807 0.6316 24 1 -0.7881 4.9887 -2.9478 25 1 1.4945 -1.7535 1.3491 26 1 2.5650 -0.3987 1.9146 27 1 2.5650 -0.3989 -1.9144 28 1 1.4945 -1.7536 -1.3489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720993565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:31 Heat of formation + Delta-G solvation = -196.920058 kcal Electronic energy + Delta-G solvation = -18123.086551 eV Core-core repulsion = 14742.927069 eV Total energy + Delta-G solvation = -3380.159482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.053 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.78786 -48.13438 -39.96546 -37.32752 -36.10021 -35.17205 -33.24072 -30.15330 -27.97920 -27.26551 -23.63502 -21.20902 -20.68201 -19.20998 -18.50551 -18.22883 -17.51268 -17.20244 -16.91668 -16.72189 -15.88112 -15.49948 -15.00491 -14.57062 -14.42890 -14.19180 -13.97868 -13.79377 -13.66739 -13.34795 -13.01277 -12.76195 -12.49981 -12.44231 -12.35074 -12.24644 -12.10346 -11.61164 -11.33342 -11.15738 -10.85993 -10.29432 -8.70332 -7.38238 0.36043 1.38240 1.40211 1.56908 2.24612 2.53117 2.63859 2.82978 2.89413 3.22548 3.37634 3.57186 3.79453 4.27231 4.40737 4.45287 4.56615 4.70023 4.74440 4.86861 5.01503 5.10910 5.30190 5.38763 5.58845 5.98848 6.33814 6.84512 8.26577 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.038365 B = 0.007904 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.647781 B = 3541.700298 C = 3913.694114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.156 3.844 3 N -1.106 6.106 4 S 2.715 3.285 5 O -1.053 7.053 6 O -1.035 7.035 7 C -1.024 5.024 8 H 0.138 0.862 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.990 3.010 12 H -0.238 1.238 13 H -0.268 1.268 14 H -0.263 1.263 15 C -0.135 4.135 16 C 0.244 3.756 17 F -0.195 7.195 18 F -0.194 7.194 19 C -0.189 4.189 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.415 0.585 24 H 0.296 0.704 25 H 0.161 0.839 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -11.873 8.269 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.067 3.933 3 N -0.863 5.863 4 S 2.816 3.184 5 O -1.043 7.043 6 O -1.025 7.025 7 C -1.158 5.158 8 H 0.156 0.844 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.809 3.191 12 H -0.161 1.161 13 H -0.193 1.193 14 H -0.188 1.188 15 C -0.174 4.174 16 C 0.207 3.793 17 F -0.176 7.176 18 F -0.175 7.175 19 C -0.228 4.228 20 H 0.104 0.896 21 H 0.088 0.912 22 H 0.124 0.876 23 H 0.249 0.751 24 H 0.106 0.894 25 H 0.179 0.821 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.927 -11.438 7.293 13.597 hybrid contribution -0.168 0.637 0.187 0.684 sum -1.095 -10.801 7.480 13.184 Atomic orbital electron populations 1.22548 0.90906 1.05454 1.04849 1.20804 0.95143 0.81051 0.96347 1.55347 1.52807 1.22917 1.55206 1.00097 0.76143 0.70350 0.71794 1.93309 1.76943 1.48294 1.85802 1.93308 1.89368 1.77159 1.42682 1.31067 1.21368 1.35639 1.27754 0.84411 1.26014 1.06073 0.91014 0.91226 1.70019 1.41169 1.24097 1.17713 0.85094 0.74823 0.79151 0.80058 1.16085 1.19306 1.18779 1.24453 0.95270 1.00964 0.96688 1.22351 0.82057 0.72105 1.02741 1.92978 1.55477 1.71710 1.97401 1.92978 1.94375 1.32720 1.97397 1.24912 0.97403 1.02117 0.98417 0.89613 0.91184 0.87624 0.75102 0.89375 0.82084 0.86962 0.90668 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.99 7.86 71.98 0.57 -4.42 15 2 C 0.16 4.66 1.28 4.13 0.01 4.66 15 3 N -1.11 -41.90 5.35 -150.14 -0.80 -42.71 15 4 S 2.71 141.65 4.67 -56.49 -0.26 141.38 15 5 O -1.05 -63.30 18.02 -128.00 -2.31 -65.60 15 6 O -1.04 -59.51 16.74 -128.00 -2.14 -61.65 15 7 C -1.02 -52.18 7.34 67.73 0.50 -51.69 15 8 H 0.14 6.03 5.98 -2.91 -0.02 6.01 15 9 C 0.07 3.66 5.46 84.66 0.46 4.13 15 10 N -0.90 -52.41 13.19 21.45 0.28 -52.13 15 11 Si 0.99 39.11 29.54 68.60 2.03 41.14 15 12 H -0.24 -8.43 7.11 99.48 0.71 -7.72 15 13 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 14 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 15 C -0.13 -2.78 7.12 31.12 0.22 -2.56 15 16 C 0.24 6.61 3.27 31.12 0.10 6.71 15 17 F -0.19 -6.30 16.92 44.97 0.76 -5.54 15 18 F -0.19 -5.06 17.41 44.97 0.78 -4.28 15 19 C -0.19 -5.61 6.98 31.12 0.22 -5.39 15 20 H 0.09 2.06 7.83 -2.39 -0.02 2.05 15 21 H 0.07 2.55 5.00 -2.39 -0.01 2.54 15 22 H 0.11 2.07 7.94 -2.39 -0.02 2.05 15 23 H 0.41 14.01 8.68 -96.74 -0.84 13.17 15 24 H 0.30 15.60 8.31 -92.71 -0.77 14.83 15 25 H 0.16 2.08 8.10 -2.39 -0.02 2.06 15 26 H 0.11 2.04 8.12 -2.39 -0.02 2.02 15 27 H 0.07 2.79 7.31 -2.39 -0.02 2.77 15 28 H 0.15 3.34 7.96 -2.39 -0.02 3.33 15 Total: -1.00 -74.51 257.71 0.78 -73.73 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.37 Total: 24.22 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 2.07 Total: -48.56 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -0.52 Total: -94.84 kcal Atomic # 8 Polarization: -122.80 SS G_CDS: -4.45 Total: -127.25 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 1.54 Total: -9.82 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 141.65 SS G_CDS: -0.26 Total: 141.38 kcal Total: -74.51 0.78 -73.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720993565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.189 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds