Wall clock time and date at job start Mon Mar 30 2020 04:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21473 * 120.00341 * 359.72050 * 12 11 10 14 14 C 1.48460 * 119.99746 * 179.72338 * 12 11 10 15 15 C 1.39522 * 120.54008 * 179.97438 * 14 12 11 16 16 C 1.38762 * 118.29148 * 180.02562 * 15 14 12 17 17 N 1.32191 * 119.16991 * 0.02562 * 16 15 14 18 18 C 1.32010 * 121.01836 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.05706 * 180.02562 * 18 17 16 20 20 N 1.31713 * 121.88390 * 359.71926 * 18 17 16 21 21 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 23 23 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 24 24 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 25 25 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 26 26 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 27 27 H 1.07999 * 120.85804 * 0.03205 * 15 14 12 28 28 H 1.08000 * 120.41233 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4018 -6.0979 0.0059 14 6 1.4448 -7.3836 0.0111 15 6 2.1310 -8.5984 0.0163 16 6 1.3906 -9.7720 0.0209 17 7 0.0706 -9.7011 0.0196 18 6 -0.5479 -8.5349 0.0145 19 17 -2.2836 -8.5011 0.0137 20 7 0.1141 -7.3962 0.0161 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8904 24 1 2.8722 -3.6042 0.8906 25 1 2.8722 -3.6042 -0.8894 26 1 0.5430 -4.9308 0.0000 27 1 3.2107 -8.6247 0.0169 28 1 1.8867 -10.7314 0.0246 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723345781.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:06 Heat of formation + Delta-G solvation = -0.501776 kcal Electronic energy + Delta-G solvation = -15516.198973 eV Core-core repulsion = 12593.202307 eV Total energy + Delta-G solvation = -2922.996666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50261 -39.18428 -37.14821 -35.11814 -34.36026 -32.85154 -32.21379 -29.78085 -26.27424 -24.82525 -24.25611 -21.40522 -20.79189 -18.51805 -18.17359 -16.46473 -16.07424 -15.90107 -15.78250 -15.20158 -14.85343 -14.52152 -14.34475 -13.42227 -13.22858 -12.32919 -12.16091 -11.73771 -11.53205 -11.28044 -11.26318 -11.05966 -10.69075 -10.45628 -10.40337 -9.84626 -9.82801 -9.53687 -9.28510 -8.68866 -8.42231 -6.10905 -4.14532 0.12482 0.42280 1.09841 2.64721 3.08030 3.28373 3.34782 3.38627 3.48501 3.62386 4.10883 4.32880 4.43011 4.55748 4.87628 5.25651 5.26023 5.66892 6.18410 6.23462 6.30403 6.61151 6.70276 7.31334 7.47811 7.57262 7.78800 7.86585 8.19461 8.33838 8.91112 9.50435 11.00550 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.030969 B = 0.004158 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.901779 B = 6732.454366 C = 7615.900302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.118 3.882 11 N -0.690 5.690 12 C 0.558 3.442 13 O -0.531 6.531 14 C 0.157 3.843 15 C -0.172 4.172 16 C 0.166 3.834 17 N -0.498 5.498 18 C 0.360 3.640 19 Cl 0.032 6.968 20 N -0.481 5.481 21 H 0.263 0.737 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.411 0.589 27 H 0.170 0.830 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -19.271 0.029 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.004 4.004 11 N -0.339 5.339 12 C 0.340 3.660 13 O -0.407 6.407 14 C 0.009 3.991 15 C -0.195 4.195 16 C -0.001 4.001 17 N -0.215 5.215 18 C 0.066 3.934 19 Cl 0.060 6.940 20 N -0.201 5.201 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.247 0.753 27 H 0.188 0.812 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.979 -19.020 0.039 19.046 hybrid contribution 0.531 0.876 -0.009 1.024 sum -0.449 -18.145 0.030 18.150 Atomic orbital electron populations 1.69957 1.06088 1.26946 1.50076 1.25000 0.94896 0.99431 0.94937 0.86504 0.79812 0.82982 0.78202 1.20549 1.21147 1.19729 1.21016 0.93221 0.90265 1.51703 0.92177 1.19346 0.94166 0.90877 0.98197 1.21926 0.96272 0.80897 1.01289 1.46308 1.11718 1.05921 1.69974 1.17711 0.86678 0.82807 0.78846 1.90791 1.12364 1.86694 1.50881 1.21972 0.88288 0.95844 0.92962 1.23101 1.04503 0.92661 0.99188 1.23378 0.87692 0.99378 0.89643 1.67852 1.11751 1.28253 1.13644 1.22943 0.90371 0.84976 0.95098 1.98458 1.01295 1.98284 1.95983 1.67855 1.08710 1.30538 1.12953 0.92777 0.95707 0.95692 0.91903 0.91902 0.75347 0.81233 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 15 10 C 0.12 2.44 5.61 -4.04 -0.02 2.41 15 11 N -0.69 -12.30 5.55 -61.05 -0.34 -12.64 15 12 C 0.56 9.35 7.83 -12.05 -0.09 9.26 15 13 O -0.53 -10.02 16.42 5.39 0.09 -9.93 15 14 C 0.16 2.17 6.79 -82.64 -0.56 1.61 15 15 C -0.17 -1.77 9.72 -38.91 -0.38 -2.14 15 16 C 0.17 1.41 11.31 -17.20 -0.19 1.22 15 17 N -0.50 -5.61 10.39 -11.65 -0.12 -5.73 15 18 C 0.36 4.60 8.17 -92.04 -0.75 3.84 15 19 Cl 0.03 0.36 29.26 -51.86 -1.52 -1.15 15 20 N -0.48 -6.76 9.67 -8.22 -0.08 -6.84 15 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.06 1.32 8.14 -51.92 -0.42 0.90 15 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.41 6.94 7.86 -40.82 -0.32 6.62 15 27 H 0.17 1.46 7.74 -52.49 -0.41 1.05 15 28 H 0.19 0.74 8.06 -52.49 -0.42 0.32 15 LS Contribution 276.80 15.07 4.17 4.17 Total: -1.00 -30.93 276.80 -7.02 -37.95 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -2.38 Total: -0.02 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.56 Total: 3.27 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.20 Total: -50.46 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.15 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.93 -7.02 -37.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723345781.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.448 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds