Wall clock time and date at job start Mon Mar 30 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48498 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46997 * 299.99678 * 3 2 1 6 6 H 1.48497 * 109.47348 * 59.99892 * 3 2 1 7 7 C 1.38809 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00436 * 205.15877 * 7 2 1 9 9 N 1.36936 * 119.99594 * 24.87326 * 7 2 1 10 10 C 1.47164 * 120.12931 * 11.33423 * 9 7 2 11 11 C 1.52020 * 111.71309 * 264.70123 * 10 9 7 12 12 C 1.53541 * 110.49075 * 263.27802 * 11 10 9 13 13 S 1.80070 * 110.51650 * 63.96196 * 12 11 10 14 14 C 1.81520 * 103.45513 * 299.62885 * 13 12 11 15 15 C 1.46798 * 120.12455 * 191.05395 * 9 7 2 16 16 H 1.09000 * 109.53798 * 59.83209 * 15 9 7 17 17 C 1.53003 * 109.53884 * 299.58103 * 15 9 7 18 18 F 1.39902 * 109.46597 * 60.00124 * 17 15 9 19 19 F 1.39898 * 109.46835 * 180.02562 * 17 15 9 20 20 F 1.39896 * 109.46939 * 300.00557 * 17 15 9 21 21 H 0.96990 * 120.00091 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.02784 * 25.27964 * 10 9 7 23 23 H 1.09000 * 109.02673 * 144.12719 * 10 9 7 24 24 H 1.09000 * 109.29863 * 23.59376 * 11 10 9 25 25 H 1.08998 * 109.29704 * 142.96466 * 11 10 9 26 26 H 1.09007 * 109.26456 * 184.22409 * 12 11 10 27 27 H 1.08993 * 109.27433 * 303.69169 * 12 11 10 28 28 H 1.09003 * 109.63043 * 212.13584 * 14 13 12 29 29 H 1.09005 * 109.63452 * 332.53042 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0136 -1.2462 0.3982 9 7 1.4210 -2.3332 -0.4978 10 6 0.1635 -2.2381 -1.2563 11 6 -1.0478 -2.4761 -0.3691 12 6 -1.5114 -3.9362 -0.4728 13 16 -0.2410 -5.0478 0.1538 14 6 1.1794 -4.7181 -0.9272 15 6 2.0444 -3.6447 -0.2827 16 1 2.1252 -3.8389 0.7868 17 6 3.4382 -3.6585 -0.9137 18 9 4.2271 -2.6655 -0.3233 19 9 4.0306 -4.9091 -0.7084 20 9 3.3307 -3.4135 -2.2869 21 1 -0.4850 0.8399 -0.0004 22 1 0.0900 -1.2449 -1.6994 23 1 0.1721 -2.9817 -2.0532 24 1 -0.7859 -2.2538 0.6654 25 1 -1.8582 -1.8177 -0.6817 26 1 -2.4229 -4.0664 0.1107 27 1 -1.7158 -4.1755 -1.5163 28 1 1.7630 -5.6300 -1.0536 29 1 0.8275 -4.3710 -1.8988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725679003.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:33 Heat of formation + Delta-G solvation = -121.286031 kcal Electronic energy + Delta-G solvation = -18541.960493 eV Core-core repulsion = 15177.453538 eV Total energy + Delta-G solvation = -3364.506955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.26231 -46.81977 -46.68228 -37.21645 -32.83891 -32.43095 -29.30797 -26.49192 -25.29159 -23.38739 -21.60613 -19.57783 -17.81725 -17.66168 -17.52680 -16.13471 -15.70565 -15.49965 -14.23691 -14.16829 -13.71069 -13.62304 -13.24092 -13.19403 -13.00588 -12.87725 -12.82292 -12.41232 -12.30527 -12.02261 -11.49473 -11.10242 -10.87379 -10.48300 -10.42982 -10.26042 -9.97837 -9.55087 -9.19457 -8.62076 -7.23296 -7.19717 -5.99134 -3.30723 2.11934 2.96715 3.31232 3.41408 3.45951 3.65586 4.27197 4.68812 4.72649 4.84241 5.23691 5.26675 5.49532 5.52430 5.54289 5.69408 5.78124 6.00483 6.28173 6.45985 6.73643 6.81086 7.39015 7.59776 7.78169 8.06455 8.96675 9.56996 9.99814 11.08008 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.012785 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.109468 B = 2189.533622 C = 3356.915574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.011 3.989 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.275 4.275 8 H 0.094 0.906 9 N -0.571 5.571 10 C 0.165 3.835 11 C -0.105 4.105 12 C -0.095 4.095 13 S -0.249 6.249 14 C -0.098 4.098 15 C 0.143 3.857 16 H 0.090 0.910 17 C 0.424 3.576 18 F -0.179 7.179 19 F -0.205 7.205 20 F -0.190 7.190 21 H 0.255 0.745 22 H 0.089 0.911 23 H 0.014 0.986 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -7.509 -2.504 7.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.188 4.188 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.402 4.402 8 H 0.111 0.889 9 N -0.290 5.290 10 C 0.040 3.960 11 C -0.145 4.145 12 C -0.243 4.243 13 S -0.021 6.021 14 C -0.246 4.246 15 C 0.028 3.972 16 H 0.108 0.892 17 C 0.364 3.636 18 F -0.160 7.160 19 F -0.187 7.187 20 F -0.172 7.172 21 H 0.065 0.935 22 H 0.107 0.893 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.360 -8.051 -1.675 8.231 hybrid contribution 0.729 1.804 -1.073 2.222 sum 0.368 -6.247 -2.748 6.835 Atomic orbital electron populations 1.70212 1.05168 1.25633 1.52517 1.24772 0.95238 0.98287 1.00463 0.86249 0.79909 0.83591 0.77268 1.20021 1.21433 1.21740 1.19671 0.98085 0.85124 1.37339 0.88862 1.44436 1.24016 0.99856 1.60701 1.20795 0.83606 1.00617 0.90955 1.22028 0.98795 0.89016 1.04699 1.23677 0.97990 1.00110 1.02537 1.86056 1.10822 1.54235 1.51008 1.23602 0.97853 1.01402 1.01738 1.21652 0.87195 0.89147 0.99181 0.89233 1.22932 0.91571 0.72120 0.76961 1.93109 1.77296 1.61937 1.83662 1.93071 1.86779 1.43938 1.94902 1.93083 1.96470 1.94151 1.33486 0.93536 0.89305 0.96760 0.89052 0.91911 0.88928 0.91222 0.87616 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.29 9.31 55.49 0.52 -22.78 15 2 C 0.01 0.29 4.85 -17.43 -0.08 0.21 15 3 Si 0.90 21.06 29.62 -169.99 -5.04 16.02 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.27 -7.08 9.02 -15.06 -0.14 -7.22 15 8 H 0.09 2.44 5.78 -52.49 -0.30 2.14 15 9 N -0.57 -13.15 2.68 -165.97 -0.45 -13.59 15 10 C 0.16 3.57 4.64 -4.18 -0.02 3.55 15 11 C -0.10 -2.10 4.43 -26.95 -0.12 -2.22 15 12 C -0.09 -1.56 6.07 37.44 0.23 -1.33 15 13 S -0.25 -4.25 21.63 -107.50 -2.32 -6.58 15 14 C -0.10 -1.66 4.98 36.74 0.18 -1.48 15 15 C 0.14 2.85 2.48 -68.19 -0.17 2.68 15 16 H 0.09 1.85 7.96 -51.93 -0.41 1.43 15 17 C 0.42 8.35 2.75 37.16 0.10 8.46 15 18 F -0.18 -3.86 14.51 2.25 0.03 -3.82 15 19 F -0.20 -3.65 16.57 2.25 0.04 -3.61 15 20 F -0.19 -3.84 16.95 2.25 0.04 -3.80 15 21 H 0.25 6.52 8.31 -40.82 -0.34 6.18 15 22 H 0.09 2.18 6.16 -51.93 -0.32 1.86 15 23 H 0.01 0.29 5.12 -51.93 -0.27 0.02 15 24 H 0.09 2.17 7.58 -51.93 -0.39 1.78 15 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.09 1.40 8.14 -51.83 -0.42 0.97 15 27 H 0.07 1.04 8.06 -51.84 -0.42 0.62 15 28 H 0.11 1.60 7.40 -51.93 -0.38 1.21 15 29 H 0.11 1.80 5.56 -51.92 -0.29 1.51 15 LS Contribution 250.05 15.07 3.77 3.77 Total: -1.00 -25.89 250.05 -6.20 -32.08 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.77 Total: -0.33 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.02 Total: 2.65 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.07 Total: -36.37 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 0.11 Total: -11.24 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.32 Total: -6.58 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -25.89 -6.20 -32.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725679003.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.205 kcal (2) G-P(sol) polarization free energy of solvation -25.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds