Wall clock time and date at job start Mon Mar 30 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.20828 * 119.99715 * 120.00127 * 12 2 1 14 14 O 1.34228 * 119.99941 * 300.00520 * 12 2 1 15 15 C 1.45200 * 116.99913 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47044 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.46893 * 179.97438 * 16 15 14 18 18 C 1.33637 * 126.03128 * 90.00444 * 17 16 15 19 19 N 1.31789 * 114.49924 * 180.02562 * 18 17 16 20 20 C 1.29030 * 117.12327 * 359.97438 * 19 18 17 21 21 S 1.70982 * 110.16347 * 359.72570 * 20 19 18 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.09003 * 109.47092 * 299.99529 * 15 14 12 27 27 H 1.09005 * 109.47069 * 59.99678 * 15 14 12 28 28 H 1.08995 * 109.47301 * 300.00207 * 16 15 14 29 29 H 1.08999 * 109.46941 * 60.00556 * 16 15 14 30 30 H 1.07996 * 122.75800 * 359.97438 * 18 17 16 31 31 H 1.07993 * 124.91413 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7558 -0.3193 4.8834 17 6 2.2937 -1.0821 6.0666 18 6 3.4572 -0.8569 6.6840 19 7 3.7031 -1.6627 7.6975 20 6 2.8114 -2.5548 7.9695 21 16 1.4960 -2.4230 6.8851 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.9111 -0.5221 -4.4375 26 1 1.8626 -2.0133 3.5564 27 1 3.3164 -0.9862 3.5568 28 1 2.1202 0.7074 4.9163 29 1 0.6663 -0.3194 4.9164 30 1 4.1406 -0.0789 6.3773 31 1 2.8831 -3.2766 8.7695 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849851994.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:31 Heat of formation + Delta-G solvation = -66.704710 kcal Electronic energy + Delta-G solvation = -16017.449905 eV Core-core repulsion = 13197.166514 eV Total energy + Delta-G solvation = -2820.283391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45160 -40.60742 -37.77202 -35.96536 -34.67887 -33.36452 -29.76990 -27.18084 -26.68455 -25.22873 -23.57968 -21.62453 -21.01068 -19.10130 -18.95668 -18.11093 -17.67039 -17.40620 -16.45288 -16.32080 -15.45898 -15.36614 -14.88559 -14.70246 -14.57243 -14.09183 -13.95389 -13.55310 -13.20449 -12.93244 -12.80651 -12.59329 -12.25036 -12.17778 -11.54149 -11.48955 -11.28337 -11.11251 -10.77231 -10.65510 -10.28371 -9.93962 -8.31438 -6.42305 -0.32600 0.37053 0.75915 1.33089 1.39035 1.42110 1.53247 1.68100 1.91707 2.32838 3.01967 3.43545 3.78595 3.83544 3.87786 4.15080 4.27210 4.37968 4.39469 4.40030 4.56112 4.72964 4.86713 4.90940 4.99713 5.15608 5.35584 5.39891 5.48830 6.21207 6.69197 6.69823 6.95879 7.22952 8.85462 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.053577 B = 0.003904 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.486841 B = 7171.167890 C = 7313.158455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.019 3.981 3 H 0.082 0.918 4 C -0.535 4.535 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.956 3.044 9 H -0.257 1.257 10 H -0.230 1.230 11 H -0.297 1.297 12 C 0.479 3.521 13 O -0.542 6.542 14 O -0.352 6.352 15 C 0.064 3.936 16 C -0.028 4.028 17 C -0.230 4.230 18 C 0.029 3.971 19 N -0.505 5.505 20 C 0.020 3.980 21 S 0.149 5.851 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.270 0.730 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 2.780 23.064 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.000 4.000 3 H 0.100 0.900 4 C -0.573 4.573 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.780 3.220 9 H -0.182 1.182 10 H -0.153 1.153 11 H -0.224 1.224 12 C 0.324 3.676 13 O -0.431 6.431 14 O -0.269 6.269 15 C -0.011 4.011 16 C -0.067 4.067 17 C -0.352 4.352 18 C -0.122 4.122 19 N -0.218 5.218 20 C -0.277 4.277 21 S 0.402 5.598 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.203 0.797 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.700 1.913 23.162 23.930 hybrid contribution 0.844 0.438 -0.887 1.301 sum -4.856 2.351 22.275 22.919 Atomic orbital electron populations 1.22012 0.93534 1.02098 1.02059 1.19095 0.96155 0.97647 0.87138 0.90041 1.21038 1.32688 1.13473 0.90072 0.94673 1.25950 0.97166 1.00613 0.94581 1.70047 1.46985 1.42643 0.98849 0.85754 0.78972 0.78938 0.78318 1.18221 1.15329 1.22416 1.24286 0.76229 0.82379 0.84707 1.90553 1.37300 1.27902 1.87357 1.86477 1.69997 1.55681 1.14758 1.23119 0.99037 0.95498 0.83424 1.19811 1.02616 0.99138 0.85153 1.25804 1.00340 1.04002 1.05008 1.22090 0.96457 1.00845 0.92836 1.66395 1.31475 1.06232 1.17737 1.28992 0.92870 1.01468 1.04368 1.84084 1.22969 1.28076 1.24626 0.92981 0.93066 0.89412 0.92052 0.92182 0.91920 0.86784 0.87939 0.79663 0.75400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.60 71.99 0.62 -4.73 16 2 C 0.02 0.87 2.33 -12.28 -0.03 0.84 16 3 H 0.08 3.47 7.20 -2.39 -0.02 3.45 16 4 C -0.54 -31.32 8.96 25.60 0.23 -31.09 16 5 H 0.03 2.41 7.00 -2.91 -0.02 2.39 16 6 C 0.01 0.84 5.45 84.65 0.46 1.30 16 7 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 8 Si 0.96 41.81 24.37 68.60 1.67 43.48 16 9 H -0.26 -10.43 6.88 99.48 0.68 -9.75 16 10 H -0.23 -8.78 6.52 99.48 0.65 -8.13 16 11 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.48 21.12 7.25 71.24 0.52 21.64 16 13 O -0.54 -28.17 15.21 21.96 0.33 -27.84 16 14 O -0.35 -11.92 10.12 -51.39 -0.52 -12.44 16 15 C 0.06 1.77 5.45 71.98 0.39 2.16 16 16 C -0.03 -0.52 6.13 29.85 0.18 -0.33 16 17 C -0.23 -4.33 5.85 24.64 0.14 -4.19 16 18 C 0.03 0.58 11.25 83.65 0.94 1.52 16 19 N -0.50 -10.70 10.54 -203.74 -2.15 -12.85 16 20 C 0.02 0.31 12.23 130.65 1.60 1.90 16 21 S 0.15 2.33 23.22 -56.49 -1.31 1.02 16 22 H 0.05 1.99 3.28 -2.39 -0.01 1.98 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.09 2.62 8.11 -2.39 -0.02 2.60 16 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.06 1.74 8.13 -2.39 -0.02 1.73 16 27 H 0.06 1.82 8.13 -2.38 -0.02 1.80 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -74.21 282.13 4.44 -69.77 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.06 Total: 8.89 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.06 Total: -10.98 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.85 Total: -71.90 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.19 Total: -40.28 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.67 Total: 43.48 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -74.21 4.44 -69.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849851994.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.067 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds