Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 C 1.50702 * 109.47184 * 240.00079 * 2 1 3 5 5 H 1.07995 * 119.99743 * 239.99863 * 4 2 1 6 6 C 1.37872 * 119.99798 * 59.99872 * 4 2 1 7 7 N 1.31512 * 120.00233 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47435 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47344 * 209.99839 * 8 6 4 11 11 H 1.48501 * 109.47355 * 329.99887 * 8 6 4 12 12 C 1.50699 * 109.47287 * 119.99756 * 2 1 3 13 13 O 1.20832 * 119.99835 * 120.00017 * 12 2 1 14 14 O 1.34231 * 120.00484 * 300.00401 * 12 2 1 15 15 C 1.45196 * 117.00413 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.47137 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47238 * 180.02562 * 16 15 14 18 18 C 1.33635 * 122.75319 * 124.73253 * 17 16 15 19 19 S 1.76192 * 107.92524 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28427 * 0.27803 * 19 18 17 21 21 N 1.29027 * 110.16712 * 359.83656 * 20 19 18 22 22 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47178 * 299.99602 * 1 2 3 24 24 H 1.09001 * 109.47402 * 60.00266 * 1 2 3 25 25 H 0.97000 * 119.99780 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47112 * 59.99997 * 15 14 12 27 27 H 1.08998 * 109.46865 * 299.99893 * 15 14 12 28 28 H 1.08997 * 109.47344 * 59.99783 * 16 15 14 29 29 H 1.08998 * 109.47310 * 299.99809 * 16 15 14 30 30 H 1.08001 * 126.03202 * 0.03585 * 18 17 16 31 31 H 1.08001 * 124.91761 * 179.84059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6033 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6309 -1.7564 -3.7119 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4497 15 6 2.2268 -0.9863 3.5897 16 6 1.7558 -0.3190 4.8834 17 6 2.2947 -1.0810 6.0667 18 6 3.0175 -0.5028 7.0306 19 16 3.4397 -1.7425 8.2094 20 6 2.6093 -2.9166 7.2847 21 7 2.0972 -2.3734 6.2323 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7087 1.1612 -3.4844 26 1 3.3163 -0.9860 3.5569 27 1 1.8626 -2.0131 3.5566 28 1 0.6663 -0.3189 4.9164 29 1 2.1203 0.7076 4.9163 30 1 3.2932 0.5403 7.0790 31 1 2.5254 -3.9617 7.5440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -72.340986 kcal Electronic energy + Delta-G solvation = -16009.038413 eV Core-core repulsion = 13188.510615 eV Total energy + Delta-G solvation = -2820.527798 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.41675 -40.79004 -37.62474 -35.93176 -33.97305 -32.60281 -30.28310 -27.29119 -26.39505 -25.29285 -23.87333 -21.65051 -20.52545 -18.92985 -18.63957 -17.99318 -17.56621 -17.36342 -16.62851 -16.25967 -15.55436 -15.12575 -14.70501 -14.47270 -14.28555 -14.13931 -13.62405 -13.05280 -12.98896 -12.83198 -12.70096 -12.58542 -12.34120 -12.29642 -12.05899 -11.52759 -11.11954 -11.05594 -10.62504 -10.53643 -10.44172 -9.79550 -8.20607 -6.33970 -0.23826 0.47868 0.74619 1.40882 1.42314 1.43731 1.53521 1.64971 2.00351 2.44159 3.09273 3.27682 3.86044 3.95843 4.02450 4.21608 4.39330 4.43419 4.47617 4.68758 4.80598 4.88341 4.90590 5.01878 5.14119 5.38595 5.48654 5.68844 5.88425 6.10145 6.72212 6.75786 7.02720 7.34829 8.85931 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.056633 B = 0.003609 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.290514 B = 7756.618025 C = 8004.127871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.472 3.528 13 O -0.546 6.546 14 O -0.359 6.359 15 C 0.072 3.928 16 C -0.033 4.033 17 C 0.042 3.958 18 C -0.249 4.249 19 S 0.172 5.828 20 C 0.014 3.986 21 N -0.511 5.511 22 H 0.026 0.974 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.269 0.731 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.204 0.796 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -1.352 22.000 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.032 3.968 3 H 0.072 0.928 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.436 6.436 14 O -0.277 6.277 15 C -0.003 4.003 16 C -0.073 4.073 17 C -0.089 4.089 18 C -0.389 4.389 19 S 0.425 5.575 20 C -0.284 4.284 21 N -0.225 5.225 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.221 0.779 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.059 -1.920 22.464 22.753 hybrid contribution 0.048 -0.283 -1.605 1.631 sum 3.108 -2.203 20.859 21.204 Atomic orbital electron populations 1.21570 0.94258 0.99861 1.02183 1.18697 0.95987 0.96234 0.85919 0.92755 1.21260 1.32749 1.13317 0.90630 0.92775 1.25629 0.94864 0.95644 1.01513 1.69952 1.36574 1.23313 1.24805 0.85467 0.78673 0.78471 0.78518 1.19774 1.19683 1.20162 1.24937 0.75960 0.82530 0.84853 1.90481 1.37670 1.27966 1.87465 1.86513 1.70119 1.55842 1.15190 1.22897 0.98264 0.95512 0.83582 1.20003 1.02299 0.98841 0.86114 1.20088 1.01006 0.89306 0.98519 1.27246 1.06160 1.06611 0.98836 1.83803 1.49871 0.99121 1.24726 1.28920 0.99454 1.06550 0.93462 1.66119 1.23357 1.11386 1.21677 0.95443 0.93006 0.90223 0.92175 0.92532 0.92631 0.88852 0.86875 0.77921 0.75852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.90 71.98 0.64 -5.19 16 2 C 0.05 2.67 2.74 -12.29 -0.03 2.64 16 3 H 0.05 2.94 8.14 -2.39 -0.02 2.92 16 4 C -0.54 -31.59 8.37 25.60 0.21 -31.38 16 5 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -50.88 11.32 21.45 0.24 -50.63 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.47 23.37 7.25 71.24 0.52 23.89 16 13 O -0.55 -29.85 15.21 21.94 0.33 -29.52 16 14 O -0.36 -14.76 10.12 -51.43 -0.52 -15.28 16 15 C 0.07 2.48 5.37 71.98 0.39 2.86 16 16 C -0.03 -0.82 6.09 29.85 0.18 -0.64 16 17 C 0.04 0.98 6.08 41.52 0.25 1.23 16 18 C -0.25 -4.20 11.07 66.77 0.74 -3.46 16 19 S 0.17 2.25 23.22 -56.49 -1.31 0.94 16 20 C 0.01 0.23 12.23 130.65 1.60 1.83 16 21 N -0.51 -12.93 10.34 -191.54 -1.98 -14.92 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 2.16 8.11 -2.39 -0.02 2.14 16 24 H 0.08 4.12 6.07 -2.39 -0.01 4.10 16 25 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 27 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.11 2.27 8.03 -2.39 -0.02 2.25 16 30 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.23 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -68.88 288.49 4.87 -64.01 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.13 Total: 5.33 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.94 Total: -6.45 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -1.74 Total: -65.55 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.19 Total: -44.80 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.31 Total: 0.94 kcal Total: -68.88 4.87 -64.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.330 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds