Wall clock time and date at job start Mon Mar 30 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21284 * 119.99711 * 179.86496 * 12 11 10 14 14 C 1.50694 * 120.00190 * 359.86765 * 12 11 10 15 15 H 1.08998 * 109.46966 * 344.99907 * 14 12 11 16 16 F 1.39906 * 109.47211 * 105.00127 * 14 12 11 17 17 C 1.52999 * 109.47388 * 224.99842 * 14 12 11 18 18 F 1.39899 * 109.47006 * 59.99920 * 17 14 12 19 19 F 1.39896 * 109.47520 * 180.02562 * 17 14 12 20 20 F 1.39907 * 109.47287 * 300.00022 * 17 14 12 21 21 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 24 24 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 25 25 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 26 26 H 1.09008 * 113.76654 * 221.15420 * 21 11 10 27 27 H 1.08991 * 113.77014 * 89.75468 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 6 0.8417 -5.5344 1.3952 13 8 1.3841 -6.4975 0.8960 14 6 -0.2232 -5.7287 2.4437 15 1 -0.4016 -4.7852 2.9594 16 9 -1.4065 -6.1573 1.8327 17 6 0.2403 -6.7816 3.4523 18 9 1.4236 -6.3531 4.0633 19 9 -0.7485 -6.9624 4.4253 20 9 0.4693 -7.9927 2.7903 21 6 2.1609 -3.7401 0.0451 22 1 -0.4849 0.8400 0.0004 23 1 0.4839 -2.5462 -0.7747 24 1 1.3259 -2.4984 2.2130 25 1 -0.3225 -2.8333 1.5223 26 1 2.2033 -4.2895 -0.8954 27 1 3.1452 -3.5473 0.4715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473672.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:08 Heat of formation + Delta-G solvation = -200.906029 kcal Electronic energy + Delta-G solvation = -19341.897011 eV Core-core repulsion = 15407.724298 eV Total energy + Delta-G solvation = -3934.172713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.35465 -48.38315 -47.75237 -47.54556 -39.62852 -37.31317 -32.85495 -31.35420 -29.08780 -25.67370 -25.35950 -23.76664 -20.83248 -19.33214 -18.84781 -18.51136 -17.99686 -17.23491 -16.65004 -16.31003 -15.53335 -14.86508 -14.60340 -14.59229 -14.45623 -14.27178 -14.14531 -13.84115 -13.80926 -13.54278 -13.28051 -12.51953 -12.23226 -11.81983 -11.58116 -11.44428 -11.10515 -10.94294 -10.56057 -9.92424 -9.50796 -9.19628 -8.73369 -8.21661 -6.30374 -4.37057 2.04462 2.52045 2.90822 3.16075 3.25963 3.29006 3.33855 3.80032 3.83180 4.20375 4.26117 4.44023 4.83406 5.00162 5.79172 5.90048 6.01076 6.18406 6.26191 6.36043 6.55338 7.38815 7.67031 7.96152 8.02249 8.17851 8.67329 9.31182 10.79235 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.040295 B = 0.005277 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.707562 B = 5304.947093 C = 5401.113164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.036 3.964 10 C 0.093 3.907 11 N -0.622 5.622 12 C 0.504 3.496 13 O -0.526 6.526 14 C 0.042 3.958 15 H 0.143 0.857 16 F -0.157 7.157 17 C 0.448 3.552 18 F -0.168 7.168 19 F -0.172 7.172 20 F -0.157 7.157 21 C 0.107 3.893 22 H 0.265 0.735 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -7.294 6.643 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.084 0.916 9 C 0.017 3.983 10 C -0.028 4.028 11 N -0.356 5.356 12 C 0.287 3.713 13 O -0.403 6.403 14 C 0.001 3.999 15 H 0.160 0.840 16 F -0.138 7.138 17 C 0.393 3.607 18 F -0.149 7.149 19 F -0.153 7.153 20 F -0.138 7.138 21 C -0.014 4.014 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.825 -7.897 6.435 10.220 hybrid contribution 0.187 0.739 0.345 0.836 sum -0.638 -7.158 6.780 9.880 Atomic orbital electron populations 1.69944 1.06092 1.27285 1.48832 1.25029 0.94886 0.99514 0.94084 0.86453 0.80187 0.83129 0.77794 1.19518 1.20807 1.20850 1.20974 0.93173 0.89391 1.52453 0.91571 1.20508 0.94182 0.91496 0.92158 1.24087 1.00038 0.75476 1.03222 1.50632 1.39751 1.04206 1.40973 1.19615 0.84082 0.83840 0.83738 1.90774 1.54893 1.39123 1.55534 1.22748 0.84691 0.98301 0.94177 0.83984 1.92985 1.45535 1.91111 1.84133 1.20365 0.75930 0.83082 0.81356 1.93238 1.47929 1.89627 1.84096 1.93230 1.61639 1.95736 1.64737 1.93291 1.94321 1.46146 1.80042 1.23678 0.93877 0.93386 0.90460 0.92513 0.91400 0.89602 0.91104 0.91355 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.79 13.29 55.43 0.74 -22.05 15 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 19.14 29.54 -169.99 -5.02 14.12 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.52 -12.41 8.77 -34.44 -0.30 -12.72 15 8 H 0.07 1.54 7.81 -52.49 -0.41 1.13 15 9 C 0.04 0.77 3.60 -90.84 -0.33 0.45 15 10 C 0.09 1.76 7.73 -2.84 -0.02 1.74 15 11 N -0.62 -11.67 3.61 -178.22 -0.64 -12.31 15 12 C 0.50 9.36 7.13 -10.99 -0.08 9.28 15 13 O -0.53 -11.25 16.33 5.55 0.09 -11.16 15 14 C 0.04 0.63 3.71 -27.89 -0.10 0.53 15 15 H 0.14 1.72 7.49 -51.93 -0.39 1.33 15 16 F -0.16 -2.49 17.03 2.25 0.04 -2.45 15 17 C 0.45 6.56 2.86 37.16 0.11 6.66 15 18 F -0.17 -2.45 17.02 2.25 0.04 -2.41 15 19 F -0.17 -2.28 17.30 2.25 0.04 -2.24 15 20 F -0.16 -2.58 15.95 2.25 0.04 -2.55 15 21 C 0.11 2.03 8.39 -2.96 -0.02 2.01 15 22 H 0.27 6.53 8.31 -40.82 -0.34 6.19 15 23 H 0.07 1.61 8.14 -51.93 -0.42 1.18 15 24 H 0.09 1.56 8.09 -51.93 -0.42 1.14 15 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.07 1.26 8.14 -51.92 -0.42 0.84 15 27 H 0.08 1.50 8.09 -51.93 -0.42 1.08 15 LS Contribution 263.26 15.07 3.97 3.97 Total: -1.00 -26.78 263.26 -3.61 -30.39 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -2.04 Total: -2.84 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.85 Total: 9.54 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.09 Total: -34.36 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 0.15 Total: -9.65 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.78 -3.61 -30.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473672.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.513 kcal (2) G-P(sol) polarization free energy of solvation -26.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds