Wall clock time and date at job start Mon Mar 30 2020 05:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99746 * 2 1 4 4 C 1.53000 * 109.47015 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46874 * 64.99527 * 4 3 2 6 6 C 1.34782 * 119.99415 * 179.97438 * 5 4 3 7 7 O 1.21757 * 120.00456 * 359.73180 * 6 5 4 8 8 C 1.46235 * 119.99526 * 180.02562 * 6 5 4 9 9 S 1.75664 * 125.22898 * 359.74800 * 8 6 5 10 10 C 1.75475 * 92.09545 * 180.02562 * 9 8 6 11 11 C 1.32767 * 111.36064 * 0.02562 * 10 9 8 12 12 C 1.39544 * 125.22967 * 179.45130 * 8 6 5 13 13 C 1.40542 * 123.71265 * 359.96786 * 12 8 6 14 14 H 1.07998 * 119.99574 * 23.44720 * 13 12 8 15 15 C 1.40304 * 119.99935 * 203.44221 * 13 12 8 16 16 N 1.30639 * 120.00217 * 9.79147 * 15 13 12 17 17 Si 1.86801 * 119.99643 * 189.79737 * 15 13 12 18 18 H 1.48500 * 109.47491 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47306 * 120.00069 * 17 15 13 20 20 H 1.48503 * 109.47262 * 239.99685 * 17 15 13 21 21 H 1.09000 * 109.47215 * 299.99941 * 1 2 3 22 22 H 1.08995 * 109.47152 * 60.00113 * 1 2 3 23 23 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47056 * 59.99875 * 3 2 1 25 25 H 1.08996 * 109.47056 * 300.00028 * 3 2 1 26 26 H 1.09005 * 109.46626 * 305.00071 * 4 3 2 27 27 H 1.08994 * 109.46979 * 184.99975 * 4 3 2 28 28 H 0.96996 * 120.00369 * 0.02562 * 5 4 3 29 29 H 1.07994 * 124.31994 * 179.97438 * 10 9 8 30 30 H 1.07997 * 122.78726 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00034 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 5.2884 0.3566 -1.4767 7 8 6.1087 0.6888 -0.6406 8 6 5.7278 -0.2621 -2.7267 9 16 4.6670 -0.7915 -4.0230 10 6 6.0211 -1.3466 -4.9913 11 6 7.1763 -1.1416 -4.3698 12 6 7.0545 -0.5174 -3.0757 13 6 8.1512 -0.2050 -2.2540 14 1 8.0154 -0.1050 -1.1873 15 6 9.4222 -0.0232 -2.8196 16 7 9.5559 0.0463 -4.1173 17 14 10.9233 0.1193 -1.7171 18 1 10.5061 0.0099 -0.2961 19 1 11.8789 -0.9711 -2.0383 20 1 11.5786 1.4332 -1.9403 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8514 0.5683 0.8410 27 1 3.9784 2.1766 0.0889 28 1 3.3224 0.3039 -1.9209 29 1 5.9268 -1.7982 -5.9677 30 1 8.1284 -1.4141 -4.8004 31 1 10.4346 0.1723 -4.5083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864383979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:05 Heat of formation + Delta-G solvation = -67.786491 kcal Electronic energy + Delta-G solvation = -16320.321164 eV Core-core repulsion = 13499.990864 eV Total energy + Delta-G solvation = -2820.330300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.53647 -37.58948 -35.96409 -33.69145 -33.01465 -29.75700 -28.70925 -26.52912 -25.73406 -22.77529 -21.66724 -19.94900 -18.72587 -17.56631 -16.58217 -16.11034 -15.61136 -15.37858 -14.91744 -14.37477 -14.00389 -13.84738 -13.51330 -12.56556 -12.43143 -12.09654 -11.99320 -11.68993 -11.60432 -11.42289 -11.15294 -11.05381 -10.86706 -10.36720 -10.08498 -9.73467 -9.60670 -9.21319 -8.38988 -8.16185 -7.44251 -7.09353 -7.00440 -4.48167 2.20127 2.97461 3.02361 3.12926 3.17617 3.68467 3.76079 3.84397 3.89856 4.22340 4.50411 5.03699 5.20061 5.29518 5.32240 5.33835 5.41485 5.58206 5.98035 6.07501 6.15594 6.72380 6.88440 7.11586 7.20793 7.24928 7.39247 7.52523 7.75429 8.41353 8.51896 8.65574 8.84603 9.65366 9.90804 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.006111 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.843984 B = 4580.794848 C = 5530.042154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.050 3.950 4 C 0.130 3.870 5 N -0.746 5.746 6 C 0.600 3.400 7 O -0.567 6.567 8 C -0.428 4.428 9 S -0.050 6.050 10 C -0.207 4.207 11 C -0.099 4.099 12 C 0.140 3.860 13 C -0.378 4.378 14 H 0.112 0.888 15 C 0.067 3.933 16 N -0.780 5.780 17 Si 0.924 3.076 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.271 1.271 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.393 0.607 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 0.760 2.342 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.027 4.027 4 C 0.006 3.994 5 N -0.400 5.400 6 C 0.397 3.603 7 O -0.450 6.450 8 C -0.547 4.547 9 S 0.205 5.795 10 C -0.341 4.341 11 C -0.132 4.132 12 C 0.129 3.871 13 C -0.409 4.409 14 H 0.130 0.870 15 C -0.154 4.154 16 N -0.404 5.404 17 Si 0.747 3.253 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.196 1.196 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.091 0.886 2.554 10.447 hybrid contribution 1.511 0.205 -0.001 1.525 sum -8.580 1.091 2.553 9.018 Atomic orbital electron populations 1.22731 0.81433 1.02692 0.99695 1.87997 1.19324 1.27695 1.95335 1.22852 0.94105 0.85062 1.00647 1.21106 0.90541 0.98865 0.88922 1.45745 1.08078 1.66552 1.19640 1.16847 0.80526 0.77386 0.85548 1.90646 1.52486 1.54679 1.47187 1.22603 0.95312 1.34702 1.02074 1.82725 1.12714 1.69709 1.14336 1.24949 0.96319 1.09738 1.03081 1.21724 0.97635 0.98432 0.95371 1.17948 0.91010 0.88010 0.90149 1.20075 0.90006 1.33352 0.97481 0.87019 1.26376 1.01648 0.91887 0.95513 1.69682 1.26601 1.32111 1.12030 0.85971 0.79061 0.78674 0.81556 1.17604 1.19507 1.19562 0.94334 0.94139 0.89706 0.92202 0.92795 0.91527 0.90833 0.77398 0.84518 0.83749 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.49 10.65 -35.23 -0.38 -5.86 16 3 C 0.05 0.65 6.07 37.16 0.23 0.87 16 4 C 0.13 2.20 6.06 -4.04 -0.02 2.17 16 5 N -0.75 -15.33 5.50 -61.75 -0.34 -15.67 16 6 C 0.60 15.29 7.76 -13.05 -0.10 15.19 16 7 O -0.57 -15.93 14.45 5.14 0.07 -15.86 16 8 C -0.43 -11.19 6.51 -35.88 -0.23 -11.42 16 9 S -0.05 -1.10 22.25 -107.50 -2.39 -3.49 16 10 C -0.21 -4.60 11.07 28.86 0.32 -4.28 16 11 C -0.10 -2.46 9.04 -39.12 -0.35 -2.82 16 12 C 0.14 3.83 5.67 -106.21 -0.60 3.22 16 13 C -0.38 -10.41 8.52 -37.94 -0.32 -10.73 16 14 H 0.11 3.24 6.03 -52.49 -0.32 2.92 16 15 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 16 N -0.78 -19.11 10.82 55.57 0.60 -18.51 16 17 Si 0.92 18.79 29.57 -169.99 -5.03 13.77 16 18 H -0.25 -5.30 7.11 56.52 0.40 -4.89 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.39 7.58 7.55 -40.82 -0.31 7.27 16 29 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 30 H 0.15 3.55 6.41 -52.49 -0.34 3.21 16 31 H 0.29 6.26 8.29 -40.82 -0.34 5.93 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -30.52 285.00 -6.72 -37.24 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.48 Total: 8.90 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.07 Total: -4.81 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.26 Total: -34.18 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.30 Total: -21.72 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.52 -6.72 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864383979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.549 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds