Wall clock time and date at job start Mon Mar 30 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30877 * 122.98226 * 2 1 4 4 C 1.30230 * 117.26022 * 179.97438 * 3 2 1 5 5 N 1.37845 * 124.74684 * 179.97438 * 4 3 2 6 6 S 1.70917 * 110.50577 * 0.26593 * 4 3 2 7 7 C 1.36706 * 122.98593 * 179.97438 * 2 1 3 8 8 C 1.46230 * 126.10887 * 0.02562 * 7 2 1 9 9 O 1.21746 * 120.00073 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99738 * 179.97438 * 8 7 2 11 11 C 1.46496 * 119.99922 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47447 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47309 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00177 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00083 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00108 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99799 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47200 * 90.00094 * 17 15 13 19 19 H 1.48498 * 109.46926 * 209.99943 * 17 15 13 20 20 H 1.48502 * 109.47226 * 329.99505 * 17 15 13 21 21 H 1.08999 * 109.46538 * 90.02613 * 1 2 3 22 22 H 1.08999 * 109.46916 * 210.02413 * 1 2 3 23 23 H 1.09000 * 109.47183 * 330.02806 * 1 2 3 24 24 H 0.96996 * 120.00212 * 0.02948 * 5 4 3 25 25 H 0.97004 * 119.99663 * 179.75332 * 5 4 3 26 26 H 0.96999 * 119.99721 * 0.02562 * 10 8 7 27 27 H 1.09002 * 109.47308 * 300.01029 * 11 10 8 28 28 H 1.08999 * 109.46741 * 60.00061 * 11 10 8 29 29 H 1.09007 * 109.46648 * 300.00247 * 12 11 10 30 30 H 1.08996 * 109.47022 * 60.00030 * 12 11 10 31 31 H 0.97006 * 120.00135 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0979 0.0000 4 6 3.5153 0.9680 0.0005 5 7 4.4100 2.0167 0.0001 6 16 3.9515 -0.6846 -0.0063 7 6 2.2513 -1.1467 0.0005 8 6 1.7295 -2.5127 0.0006 9 8 0.5274 -2.7052 -0.0003 10 7 2.5795 -3.5587 0.0006 11 6 2.0568 -4.9272 0.0001 12 6 3.2223 -5.9184 0.0009 13 6 2.6846 -7.3262 -0.0002 14 1 1.6182 -7.4969 -0.0010 15 6 3.5541 -8.3963 -0.0004 16 7 3.0848 -9.6248 -0.0008 17 14 5.3986 -8.1009 0.0016 18 1 5.8861 -8.0239 1.4022 19 1 6.0797 -9.2193 -0.6987 20 1 5.6964 -6.8249 -0.6971 21 1 -0.3632 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.0857 2.9308 -0.0002 25 1 5.3639 1.8404 0.0041 26 1 3.5373 -3.4053 0.0009 27 1 1.4467 -5.0835 0.8898 28 1 1.4474 -5.0831 -0.8901 29 1 3.8326 -5.7622 -0.8887 30 1 3.8313 -5.7624 0.8913 31 1 3.6966 -10.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055176332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:56 Heat of formation + Delta-G solvation = -28.335505 kcal Electronic energy + Delta-G solvation = -15953.552336 eV Core-core repulsion = 13167.225511 eV Total energy + Delta-G solvation = -2786.326826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26990 -40.12259 -36.70103 -35.98878 -34.80390 -32.30280 -31.54748 -29.34122 -26.63870 -24.85110 -23.18833 -22.44387 -20.86441 -19.50998 -18.94218 -18.34195 -17.54156 -16.75619 -16.67948 -16.19087 -15.98184 -15.95455 -15.01587 -14.81107 -14.60147 -14.47451 -13.82021 -13.49318 -13.34824 -13.04118 -12.34022 -12.17480 -12.15395 -11.76125 -11.70535 -11.51655 -11.14501 -10.77948 -10.70557 -10.39589 -10.08501 -8.90148 -8.28959 -6.36261 -0.54494 -0.05083 0.55074 1.39764 1.42422 1.49741 1.53691 2.16664 2.20054 2.36605 2.37900 3.06011 3.62703 3.90690 4.12193 4.39528 4.43186 4.69973 4.74430 4.74876 4.85959 5.10332 5.31500 5.39633 5.41839 5.63895 5.82046 6.20447 6.23203 6.51543 6.71524 6.89557 7.18157 7.28366 8.87780 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.004689 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.348196 B = 5970.601280 C = 6806.197576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.202 3.798 3 N -0.576 5.576 4 C 0.332 3.668 5 N -0.780 5.780 6 S 0.179 5.821 7 C -0.381 4.381 8 C 0.595 3.405 9 O -0.571 6.571 10 N -0.717 5.717 11 C 0.147 3.853 12 C -0.014 4.014 13 C -0.539 4.539 14 H 0.031 0.969 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.237 1.237 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.424 0.576 25 H 0.433 0.567 26 H 0.405 0.595 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.113 26.348 -0.018 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 N -0.303 5.303 4 C -0.040 4.040 5 N -0.333 5.333 6 S 0.428 5.572 7 C -0.507 4.507 8 C 0.384 3.616 9 O -0.454 6.454 10 N -0.368 5.368 11 C 0.023 3.977 12 C -0.051 4.051 13 C -0.577 4.577 14 H 0.049 0.951 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.160 1.160 21 H 0.104 0.896 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.258 0.742 25 H 0.268 0.732 26 H 0.240 0.760 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.157 26.043 -0.032 27.291 hybrid contribution 0.052 -0.282 0.016 0.287 sum 8.209 25.761 -0.016 27.037 Atomic orbital electron populations 1.20636 0.85899 1.04209 1.03953 1.20709 0.98443 0.84540 0.90111 1.66137 1.03172 1.31310 1.29727 1.23935 0.91005 0.94644 0.94420 1.41580 1.07211 1.05679 1.78816 1.83575 1.03716 0.97417 1.72508 1.24849 0.96584 0.97463 1.31808 1.16885 0.85746 0.83317 0.75669 1.90745 1.15812 1.85817 1.52990 1.45944 1.09886 1.05975 1.74953 1.21086 0.97107 0.79063 1.00427 1.19663 0.94774 0.92681 0.98020 1.21230 0.93892 0.90991 1.51588 0.95093 1.26056 1.05136 0.94325 0.93646 1.70071 1.37495 0.99487 1.51942 0.85571 0.77960 0.79191 0.79391 1.18903 1.21150 1.16049 0.89561 0.89865 0.89278 0.74184 0.73217 0.75980 0.93281 0.93288 0.94566 0.94691 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 9.71 71.24 0.69 -1.56 16 2 C 0.20 5.54 6.83 42.34 0.29 5.83 16 3 N -0.58 -13.66 10.54 -188.52 -1.99 -15.65 16 4 C 0.33 5.86 8.53 179.42 1.53 7.39 16 5 N -0.78 -6.05 9.04 -59.96 -0.54 -6.59 16 6 S 0.18 3.41 22.33 -56.49 -1.26 2.15 16 7 C -0.38 -10.92 6.49 23.99 0.16 -10.76 16 8 C 0.60 21.14 7.76 86.32 0.67 21.81 16 9 O -0.57 -23.86 14.30 -4.49 -0.06 -23.92 16 10 N -0.72 -24.77 5.55 -467.51 -2.60 -27.36 16 11 C 0.15 6.17 5.61 86.38 0.48 6.66 16 12 C -0.01 -0.62 4.15 29.85 0.12 -0.49 16 13 C -0.54 -30.95 9.66 25.60 0.25 -30.70 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 15 C 0.01 0.32 5.47 84.66 0.46 0.78 16 16 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 17 Si 0.96 42.29 27.47 68.60 1.88 44.18 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.24 -9.35 6.54 99.48 0.65 -8.69 16 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.08 2.49 6.04 -2.39 -0.01 2.48 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.42 2.13 8.95 -92.71 -0.83 1.30 16 25 H 0.43 0.74 8.95 -92.71 -0.83 -0.09 16 26 H 0.40 11.63 7.64 -92.71 -0.71 10.92 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.55 7.20 -2.38 -0.02 1.53 16 30 H 0.03 1.47 7.57 -2.39 -0.02 1.46 16 31 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -74.78 283.36 -0.83 -75.61 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -1.22 Total: 11.66 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.66 Total: -1.04 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.82 Total: -108.64 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.26 Total: 2.15 kcal Total: -74.78 -0.83 -75.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055176332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.276 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds