Wall clock time and date at job start Mon Mar 30 2020 04:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00250 * 2 1 4 4 H 1.48500 * 109.47166 * 240.00062 * 3 2 1 5 5 H 1.48508 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47514 * 119.99753 * 3 2 1 7 7 C 1.37871 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00421 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47344 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00040 * 269.99640 * 10 9 7 12 12 O 1.21283 * 120.00223 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99776 * 180.02562 * 11 10 9 14 14 H 1.08997 * 110.76551 * 32.04913 * 13 11 10 15 15 C 1.55140 * 110.85526 * 155.76806 * 13 11 10 16 16 C 1.53857 * 106.90197 * 160.29600 * 15 13 11 17 17 C 1.54277 * 108.92283 * 312.74438 * 16 15 13 18 18 S 1.83094 * 104.65020 * 27.95063 * 17 16 15 19 19 C 1.46502 * 120.00042 * 90.00180 * 10 9 7 20 20 C 1.53002 * 117.49878 * 351.25131 * 19 10 9 21 21 C 1.53000 * 117.50101 * 59.90887 * 19 10 9 22 22 H 0.97005 * 119.99852 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46676 * 59.99119 * 9 7 2 24 24 H 1.09001 * 109.46989 * 299.99745 * 9 7 2 25 25 H 1.09004 * 109.97301 * 279.65335 * 15 13 11 26 26 H 1.08994 * 109.97847 * 40.92922 * 15 13 11 27 27 H 1.08997 * 109.61150 * 192.82151 * 16 15 13 28 28 H 1.09001 * 109.46467 * 72.57668 * 16 15 13 29 29 H 1.09006 * 110.39816 * 269.15723 * 17 16 15 30 30 H 1.09003 * 110.50239 * 146.79812 * 17 16 15 31 31 H 1.09002 * 115.54961 * 205.58106 * 19 10 9 32 32 H 1.09000 * 117.49996 * 215.00801 * 20 19 10 33 33 H 1.08999 * 117.49664 * 0.02562 * 20 19 10 34 34 H 1.09008 * 117.49673 * 359.97438 * 21 19 10 35 35 H 1.08999 * 117.49942 * 144.97376 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6408 -4.1249 -1.1666 12 8 2.2470 -3.6638 -2.2170 13 6 3.6196 -5.2707 -1.1666 14 1 3.4593 -5.9159 -0.3028 15 6 3.5262 -6.0771 -2.4887 16 6 4.8385 -6.8688 -2.6235 17 6 6.0245 -5.9229 -2.3428 18 16 5.3469 -4.6543 -1.2098 19 6 2.6789 -4.1695 1.2693 20 6 2.3104 -3.4209 2.5518 21 6 1.6330 -4.7531 2.2213 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5570 -0.8897 24 1 0.6240 -2.5568 0.8903 25 1 2.6800 -6.7631 -2.4474 26 1 3.4134 -5.3967 -3.3326 27 1 4.9216 -7.2700 -3.6335 28 1 4.8447 -7.6870 -1.9033 29 1 6.3693 -5.4610 -3.2680 30 1 6.8396 -6.4647 -1.8629 31 1 3.6536 -4.6561 1.2329 32 1 3.0427 -3.4149 3.3591 33 1 1.7135 -2.5144 2.4515 34 1 0.5906 -4.7225 1.9038 35 1 1.9195 -5.6240 2.8109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070436435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:42 Heat of formation + Delta-G solvation = -31.898339 kcal Electronic energy + Delta-G solvation = -17261.225977 eV Core-core repulsion = 14578.284999 eV Total energy + Delta-G solvation = -2682.940978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98019 -38.43555 -36.66241 -35.25586 -33.84954 -31.42127 -29.23719 -26.44744 -24.83538 -23.46818 -23.10506 -21.90697 -19.97115 -18.81470 -18.56635 -17.80578 -17.09674 -16.53741 -16.06828 -15.72829 -15.27220 -15.15481 -14.94090 -14.41032 -13.94307 -13.56937 -13.43472 -13.09955 -12.82325 -12.66546 -12.56506 -12.45001 -12.27831 -12.22255 -12.14251 -11.75648 -11.52870 -11.45438 -10.94509 -10.75645 -10.66580 -9.32201 -8.76712 -8.24690 -6.38650 0.38559 1.33014 1.34904 1.37228 1.44688 1.98245 2.11555 2.37839 3.03432 3.04485 3.39591 3.52231 3.81601 3.87916 3.99944 4.03669 4.11841 4.19926 4.27204 4.65273 4.74320 4.80787 4.82344 4.91796 4.97370 4.99283 5.08773 5.20816 5.22210 5.37152 5.51303 5.77197 6.02775 6.62050 6.70932 7.21509 7.36539 8.81852 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.006986 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.120430 B = 4007.314620 C = 4462.454926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.264 3.736 10 N -0.570 5.570 11 C 0.518 3.482 12 O -0.582 6.582 13 C -0.054 4.054 14 H 0.141 0.859 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.064 4.064 18 S -0.314 6.314 19 C 0.050 3.950 20 C -0.182 4.182 21 C -0.170 4.170 22 H 0.268 0.732 23 H -0.003 1.003 24 H 0.030 0.970 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.347 -16.888 1.676 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.063 0.937 9 C 0.143 3.857 10 N -0.299 5.299 11 C 0.305 3.695 12 O -0.462 6.462 13 C -0.185 4.185 14 H 0.158 0.842 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.211 4.211 18 S -0.088 6.088 19 C -0.054 4.054 20 C -0.219 4.219 21 C -0.209 4.209 22 H 0.077 0.923 23 H 0.015 0.985 24 H 0.048 0.952 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.512 -15.596 1.676 18.882 hybrid contribution -0.653 0.653 -0.677 1.145 sum 9.859 -14.942 1.000 17.930 Atomic orbital electron populations 1.70030 1.07350 1.28205 1.51015 1.25767 0.95773 1.02721 0.94465 0.85555 0.78442 0.78471 0.78909 1.20615 1.19893 1.18604 1.21536 0.92840 0.91856 1.51125 0.93666 1.18732 0.87786 0.83395 0.95751 1.47667 1.43989 1.33127 1.05133 1.20393 0.81716 0.84212 0.83209 1.90631 1.59991 1.63101 1.32523 1.24157 0.92047 0.96952 1.05364 0.84162 1.22598 1.00883 0.98454 0.93689 1.22287 0.89379 0.97850 1.05715 1.24247 1.01230 0.95707 0.99956 1.88108 1.08173 1.47220 1.65330 1.21965 0.98988 1.03553 0.80913 1.23309 1.04349 0.96417 0.97852 1.23480 0.97561 0.97763 1.02063 0.92331 0.98529 0.95220 0.87996 0.91869 0.87246 0.88023 0.88622 0.85659 0.83842 0.85682 0.90529 0.90334 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.01 0.70 5.46 84.65 0.46 1.17 16 3 Si 0.96 46.67 29.54 68.60 2.03 48.70 16 4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -32.13 9.18 25.60 0.24 -31.90 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.26 14.77 4.46 85.64 0.38 15.15 16 10 N -0.57 -25.80 2.79 -802.13 -2.24 -28.04 16 11 C 0.52 22.99 6.95 87.66 0.61 23.60 16 12 O -0.58 -31.54 15.45 -3.04 -0.05 -31.59 16 13 C -0.05 -1.67 2.63 30.58 0.08 -1.58 16 14 H 0.14 3.43 6.78 -2.39 -0.02 3.41 16 15 C -0.12 -2.91 5.72 31.62 0.18 -2.73 16 16 C -0.11 -1.75 6.39 31.32 0.20 -1.55 16 17 C -0.06 -1.17 7.34 72.42 0.53 -0.64 16 18 S -0.31 -9.56 22.64 -56.49 -1.28 -10.84 16 19 C 0.05 1.70 5.68 44.99 0.26 1.95 16 20 C -0.18 -6.03 9.72 30.62 0.30 -5.73 16 21 C -0.17 -4.73 10.13 30.62 0.31 -4.42 16 22 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 23 H 0.00 -0.22 7.42 -2.38 -0.02 -0.23 16 24 H 0.03 1.67 6.33 -2.39 -0.02 1.66 16 25 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.06 1.99 7.33 -2.39 -0.02 1.98 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.14 4.12 6.71 -2.39 -0.02 4.10 16 32 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.08 3.24 6.29 -2.39 -0.02 3.23 16 34 H 0.08 2.47 8.12 -2.38 -0.02 2.45 16 35 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -77.23 300.78 3.36 -73.87 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.07 Total: 11.37 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.54 Total: -6.68 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.96 Total: -84.82 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.28 Total: -10.84 kcal Total: -77.23 3.36 -73.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070436435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.967 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds