Wall clock time and date at job start Mon Mar 30 2020 04:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99983 * 2 1 4 4 C 1.50694 * 109.47052 * 270.00359 * 3 2 1 5 5 H 1.08004 * 120.00596 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99932 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99798 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00052 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46937 * 89.99892 * 8 6 4 10 10 H 1.48496 * 109.46653 * 209.99859 * 8 6 4 11 11 H 1.48494 * 109.46870 * 329.99915 * 8 6 4 12 12 C 1.34774 * 119.99728 * 180.02562 * 2 1 3 13 13 O 1.21635 * 119.99977 * 182.82274 * 12 2 1 14 14 C 1.47264 * 120.00240 * 2.82667 * 12 2 1 15 15 C 1.35210 * 123.14263 * 173.20395 * 14 12 2 16 16 S 1.70944 * 108.82713 * 179.73698 * 15 14 12 17 17 C 1.70771 * 91.12988 * 0.33547 * 16 15 14 18 18 C 1.50697 * 124.72019 * 179.97438 * 17 16 15 19 19 N 1.46892 * 109.47214 * 269.69797 * 18 17 16 20 20 N 1.28649 * 110.55863 * 359.65173 * 17 16 15 21 21 H 1.09007 * 109.46868 * 264.02133 * 1 2 3 22 22 H 1.08997 * 109.47316 * 24.01844 * 1 2 3 23 23 H 1.08992 * 109.47454 * 144.02345 * 1 2 3 24 24 H 1.08997 * 109.47046 * 30.00641 * 3 2 1 25 25 H 1.09001 * 109.46783 * 150.00195 * 3 2 1 26 26 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 27 27 H 1.08000 * 125.58606 * 359.97438 * 15 14 12 28 28 H 1.09009 * 109.46727 * 149.69575 * 18 17 16 29 29 H 1.08995 * 109.47044 * 29.70250 * 18 17 16 30 30 H 1.00894 * 111.00336 * 56.04373 * 19 18 17 31 31 H 1.00904 * 111.00414 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4375 3.4172 -3.4339 9 1 2.3077 4.2608 -3.8997 10 1 4.6981 4.1995 -3.4968 11 1 3.5536 2.2203 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3541 -1.1679 0.0514 14 6 1.4039 -2.4417 -0.0640 15 6 2.0136 -3.6406 -0.2022 16 16 0.8220 -4.8660 -0.2265 17 6 -0.4214 -3.7072 -0.0608 18 6 -1.8921 -4.0294 0.0019 19 7 -2.4541 -4.0186 -1.3552 20 7 0.0727 -2.5215 0.0097 21 1 -0.3633 -0.1070 1.0221 22 1 -0.3634 0.9386 -0.4183 23 1 -0.3634 -0.8316 -0.6036 24 1 1.6085 2.0283 0.5139 25 1 3.1500 1.1383 0.5138 26 1 4.0317 4.4431 -0.8503 27 1 3.0792 -3.7985 -0.2802 28 1 -2.4017 -3.2837 0.6123 29 1 -2.0294 -5.0161 0.4442 30 1 -1.9556 -4.6556 -1.9581 31 1 -3.4403 -4.2316 -1.3400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085544720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:41 Heat of formation + Delta-G solvation = 25.235133 kcal Electronic energy + Delta-G solvation = -16517.890726 eV Core-core repulsion = 13733.886898 eV Total energy + Delta-G solvation = -2784.003829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26683 -38.04888 -35.06714 -34.77063 -32.50704 -30.36869 -28.04071 -26.56167 -25.78896 -24.46923 -22.30520 -20.51864 -19.20397 -17.71944 -16.58903 -16.41900 -15.83468 -15.44454 -15.08800 -14.69462 -14.40048 -13.92824 -13.75054 -13.32446 -12.75187 -12.40169 -12.16408 -12.06311 -11.97867 -11.53613 -11.14134 -10.85524 -10.53122 -10.12837 -9.67413 -9.62317 -9.39365 -9.14029 -9.02981 -8.80676 -8.38614 -7.52874 -5.99371 -4.04015 0.59336 1.23106 1.61578 2.27832 3.34500 3.40132 3.45473 3.80127 3.96827 4.17425 4.38218 4.50132 4.77099 5.04061 5.28672 5.33912 5.36808 5.49051 5.90109 6.19657 6.32999 6.65919 6.75493 7.03601 7.12993 7.48445 7.53219 7.65420 7.97510 8.28068 8.46690 8.92181 9.09598 9.60618 11.08675 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030731 B = 0.005343 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.918436 B = 5239.093991 C = 5494.603245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.579 5.579 3 C 0.243 3.757 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.575 3.425 13 O -0.540 6.540 14 C 0.027 3.973 15 C -0.224 4.224 16 S 0.176 5.824 17 C 0.015 3.985 18 C 0.144 3.856 19 N -0.840 5.840 20 N -0.412 5.412 21 H 0.041 0.959 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.263 0.737 27 H 0.188 0.812 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.343 0.657 31 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -18.746 1.625 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.308 5.308 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.358 3.642 13 O -0.418 6.418 14 C -0.108 4.108 15 C -0.365 4.365 16 S 0.432 5.568 17 C -0.265 4.265 18 C 0.010 3.990 19 N -0.373 5.373 20 N -0.128 5.128 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.205 0.795 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.348 -18.357 1.682 21.647 hybrid contribution 0.493 0.314 -0.785 0.978 sum -10.855 -18.043 0.897 21.076 Atomic orbital electron populations 1.22086 0.79995 1.03174 1.01045 1.48021 1.07219 1.06982 1.68593 1.19386 0.92660 0.77894 0.97668 1.21440 1.36398 1.06385 0.92203 0.92413 1.24935 0.95337 0.96327 0.97490 1.69938 1.38437 1.14336 1.30716 0.86475 0.77643 0.78577 0.84623 1.20586 1.21072 1.19911 1.17040 0.86359 0.82047 0.78773 1.90777 1.12678 1.86565 1.51795 1.20968 0.88144 0.96047 1.05622 1.26537 1.06589 0.95554 1.07865 1.82558 0.96675 1.12084 1.65485 1.27169 1.01383 0.91749 1.06203 1.20201 0.86280 1.00689 0.91806 1.58506 1.07907 1.61310 1.09534 1.67351 1.10218 1.21888 1.13365 0.94081 0.91868 0.88853 0.94664 0.93673 0.92729 0.79453 0.87805 0.93231 0.84464 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 9.47 59.85 0.57 2.15 16 2 N -0.58 -13.87 2.86 -184.29 -0.53 -14.40 16 3 C 0.24 6.78 5.15 -5.20 -0.03 6.75 16 4 C -0.53 -15.65 9.39 -34.44 -0.32 -15.97 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 8 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.57 13.53 7.65 -12.59 -0.10 13.44 16 13 O -0.54 -14.46 16.29 5.25 0.09 -14.38 16 14 C 0.03 0.49 6.49 -84.52 -0.55 -0.05 16 15 C -0.22 -3.38 10.62 29.65 0.31 -3.06 16 16 S 0.18 1.83 22.92 -107.50 -2.46 -0.63 16 17 C 0.01 0.18 6.85 -13.61 -0.09 0.09 16 18 C 0.14 1.21 7.36 -4.98 -0.04 1.17 16 19 N -0.84 -6.62 9.61 -11.41 -0.11 -6.73 16 20 N -0.41 -6.63 6.76 -8.51 -0.06 -6.69 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.24 8.03 -51.93 -0.42 0.82 16 23 H 0.09 1.76 5.26 -51.93 -0.27 1.49 16 24 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 25 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.19 2.70 8.04 -52.49 -0.42 2.28 16 28 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.34 2.38 8.98 -39.29 -0.35 2.03 16 31 H 0.35 1.83 9.08 -39.29 -0.36 1.47 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -35.22 286.41 -6.82 -42.03 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.44 Total: -0.67 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.34 Total: 6.22 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.04 Total: -54.41 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.22 -6.82 -42.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085544720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.268 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds