Wall clock time and date at job start Mon Mar 30 2020 04:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.39752 * 126.08778 * 265.02631 * 3 2 1 5 5 N 1.30846 * 108.32470 * 179.97438 * 4 3 2 6 6 N 1.40062 * 108.37489 * 359.97438 * 5 4 3 7 7 H 0.97010 * 126.05084 * 179.97438 * 6 5 4 8 8 C 1.35260 * 107.90555 * 359.77808 * 6 5 4 9 9 N 1.39479 * 126.21680 * 180.22804 * 8 6 5 10 10 C 1.34781 * 119.99689 * 0.15704 * 9 8 6 11 11 O 1.21289 * 120.00083 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99343 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46716 * 180.02562 * 12 10 9 14 14 C 1.76200 * 99.99868 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00253 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00224 * 179.97438 * 14 13 12 17 17 N 1.31632 * 119.99593 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00319 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47043 * 59.99803 * 18 16 14 20 20 H 1.48503 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47087 * 300.00180 * 18 16 14 22 22 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 27 27 H 1.08001 * 125.83476 * 359.93956 * 4 3 2 28 28 H 0.96996 * 119.99804 * 180.16158 * 9 8 6 29 29 H 1.09003 * 109.47387 * 299.99481 * 12 10 9 30 30 H 1.08993 * 109.47741 * 60.00088 * 12 10 9 31 31 H 0.96995 * 120.00018 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3991 2.1642 -1.1251 5 7 2.7814 3.3507 -0.7275 6 7 2.6710 3.4056 0.6677 7 1 2.8883 4.1671 1.2281 8 6 2.2036 2.2105 1.0952 9 7 1.9471 1.8515 2.4184 10 6 2.1628 2.7374 3.4109 11 8 2.5805 3.8466 3.1536 12 6 1.8862 2.3492 4.8406 13 16 2.2710 3.7429 5.9294 14 6 1.8670 3.0324 7.4903 15 1 1.5039 2.0166 7.5436 16 6 2.0165 3.7776 8.6517 17 7 2.4596 5.0154 8.5869 18 14 1.5889 3.0241 10.3066 19 1 2.4346 1.8256 10.5381 20 1 1.8353 4.0184 11.3818 21 1 0.1575 2.6290 10.3156 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.3722 1.8182 -2.1479 28 1 1.6135 0.9642 2.6241 29 1 0.8343 2.0843 4.9481 30 1 2.5057 1.4943 5.1114 31 1 2.5644 5.5361 9.3985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159454102.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:41 Heat of formation + Delta-G solvation = 26.658779 kcal Electronic energy + Delta-G solvation = -15999.125714 eV Core-core repulsion = 13215.183619 eV Total energy + Delta-G solvation = -2783.942095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.60336 -39.33420 -35.12974 -33.94722 -32.54620 -31.04745 -29.56619 -27.96112 -25.61216 -23.52137 -22.55119 -20.84378 -20.14582 -17.97091 -17.70868 -16.62492 -15.84439 -15.77404 -14.90470 -14.61903 -14.38367 -14.13253 -13.96560 -13.68187 -13.27980 -12.69245 -12.52071 -12.41158 -11.70154 -11.23675 -11.18019 -11.11854 -11.02501 -10.88030 -10.52035 -10.06099 -9.95151 -9.25776 -9.16628 -8.44308 -8.01038 -6.66876 -6.33245 -4.06513 1.73587 2.39573 2.55657 2.95985 2.99422 3.16790 3.21556 3.24724 3.50852 4.08055 4.65705 4.73219 4.92587 5.02606 5.11833 5.29182 5.35181 5.42792 5.53146 5.59902 5.70519 5.83204 5.84623 5.93465 6.09491 6.14874 6.63676 7.04006 7.46563 7.48238 7.80172 7.97518 8.23228 9.12211 10.74162 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.004279 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.714282 B = 6541.790721 C = 7113.451054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C -0.283 4.283 4 C 0.068 3.932 5 N -0.297 5.297 6 N -0.463 5.463 7 H 0.451 0.549 8 C 0.335 3.665 9 N -0.650 5.650 10 C 0.537 3.463 11 O -0.506 6.506 12 C -0.154 4.154 13 S -0.054 6.054 14 C -0.540 4.540 15 H 0.075 0.925 16 C 0.076 3.924 17 N -0.867 5.867 18 Si 0.921 3.079 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.425 0.575 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -11.115 -14.499 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.298 4.298 4 C -0.118 4.118 5 N -0.121 5.121 6 N -0.183 5.183 7 H 0.304 0.696 8 C 0.110 3.890 9 N -0.301 5.301 10 C 0.325 3.675 11 O -0.378 6.378 12 C -0.304 4.304 13 S 0.173 5.827 14 C -0.688 4.688 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.502 5.502 18 Si 0.747 3.253 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.200 0.800 28 H 0.264 0.736 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.762 -7.927 -15.073 17.122 hybrid contribution -1.113 -2.550 2.046 3.454 sum -2.875 -10.478 -13.027 16.963 Atomic orbital electron populations 1.21814 0.95658 1.01114 1.02103 1.19713 0.95043 0.90775 1.02137 1.19387 1.20685 0.99313 0.90404 1.23471 0.98067 0.90918 0.99323 1.77404 1.25846 1.20854 0.88020 1.46983 1.52784 1.12521 1.06015 0.69648 1.17911 0.97667 0.88374 0.85087 1.43275 1.66103 1.18480 1.02254 1.20822 0.75575 0.83865 0.87196 1.90525 1.43018 1.21022 1.83274 1.23533 1.05693 1.08087 0.93097 1.85452 1.86331 1.12531 0.98411 1.22801 1.51975 1.02267 0.91743 0.90720 1.25000 0.94452 0.94723 0.99256 1.69992 1.42428 1.08239 1.29509 0.86188 0.79061 0.78844 0.81230 1.19839 1.20730 1.19833 0.92593 0.93050 0.92771 0.92131 0.90993 0.80042 0.73643 0.88212 0.88203 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.04 -0.32 6.17 -27.89 -0.17 -0.49 16 3 C -0.28 -3.28 5.38 -104.82 -0.56 -3.85 16 4 C 0.07 0.81 11.95 -17.41 -0.21 0.60 16 5 N -0.30 -4.42 12.69 30.60 0.39 -4.03 16 6 N -0.46 -7.27 6.99 31.15 0.22 -7.05 16 7 H 0.45 7.54 6.46 -182.62 -1.18 6.36 16 8 C 0.33 4.66 7.69 -153.15 -1.18 3.48 16 9 N -0.65 -8.38 5.42 -11.46 -0.06 -8.44 16 10 C 0.54 9.06 7.81 -10.98 -0.09 8.97 16 11 O -0.51 -10.19 13.41 5.55 0.07 -10.12 16 12 C -0.15 -2.78 6.16 36.01 0.22 -2.56 16 13 S -0.05 -1.36 20.57 -107.50 -2.21 -3.57 16 14 C -0.54 -14.65 9.50 30.94 0.29 -14.35 16 15 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 16 C 0.08 2.07 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.32 13.22 55.49 0.73 -24.59 16 18 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.43 3.98 8.22 -40.82 -0.34 3.65 16 29 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 30 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -32.36 288.73 -7.38 -39.74 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.42 Total: 5.10 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.42 Total: -7.01 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 1.28 Total: -44.11 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.21 Total: -3.57 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.36 -7.38 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159454102.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.397 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds