Wall clock time and date at job start Mon Mar 30 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47058 * 269.99806 * 3 2 1 5 5 H 1.48492 * 109.47336 * 30.00149 * 3 2 1 6 6 H 1.48509 * 109.47124 * 149.99995 * 3 2 1 7 7 C 1.39580 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00117 * 359.97438 * 7 2 1 9 9 N 1.36122 * 120.00341 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00219 * 179.97438 * 9 7 2 11 11 O 1.21505 * 120.00377 * 359.97438 * 10 9 7 12 12 C 1.48838 * 120.00185 * 180.02562 * 10 9 7 13 13 O 1.21439 * 119.99732 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00102 * 180.02562 * 12 10 9 15 15 C 1.47423 * 125.64935 * 0.02562 * 14 12 10 16 16 C 1.54909 * 104.83351 * 155.83866 * 15 14 12 17 17 C 1.55158 * 101.61642 * 36.99324 * 16 15 14 18 18 H 1.08999 * 110.72042 * 82.87870 * 17 16 15 19 19 C 1.50695 * 110.72412 * 206.15548 * 17 16 15 20 20 N 1.34771 * 120.00332 * 179.97438 * 19 17 16 21 21 O 1.21283 * 119.99779 * 0.02562 * 19 17 16 22 22 C 1.47016 * 125.64624 * 179.97438 * 14 12 10 23 23 H 0.97003 * 119.99755 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99473 * 0.02562 * 9 7 2 25 25 H 1.09000 * 110.36544 * 37.00287 * 15 14 12 26 26 H 1.09002 * 110.46474 * 274.72637 * 15 14 12 27 27 H 1.09002 * 111.00594 * 155.08642 * 16 15 14 28 28 H 1.09002 * 111.00655 * 278.89906 * 16 15 14 29 29 H 0.96999 * 119.99981 * 0.02562 * 20 19 17 30 30 H 0.96999 * 120.00320 * 179.97438 * 20 19 17 31 31 H 1.09000 * 109.88531 * 300.50046 * 22 14 12 32 32 H 1.08996 * 109.88671 * 61.51859 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4402 0.7001 7 6 2.0080 -1.2088 0.0005 8 1 1.4680 -2.1441 0.0014 9 7 3.3693 -1.2089 0.0000 10 6 4.0431 -2.3760 0.0011 11 8 3.4356 -3.4283 0.0029 12 6 5.5315 -2.3761 0.0011 13 8 6.1387 -1.3244 -0.0004 14 7 6.2053 -3.5433 0.0016 15 6 5.5974 -4.8864 0.0016 16 6 6.6788 -5.8112 -0.6107 17 6 7.9798 -5.1998 -0.0267 18 1 8.1637 -5.5742 0.9803 19 6 9.1543 -5.4864 -0.9264 20 7 10.3816 -5.0384 -0.5958 21 8 8.9948 -6.1194 -1.9486 22 6 7.6683 -3.6880 0.0011 23 1 -0.4850 0.8401 0.0004 24 1 3.8542 -0.3688 -0.0004 25 1 4.6978 -4.8956 -0.6137 26 1 5.3632 -5.1986 1.0194 27 1 6.5470 -6.8406 -0.2773 28 1 6.6733 -5.7515 -1.6990 29 1 10.5091 -4.5318 0.2216 30 1 11.1376 -5.2232 -1.1747 31 1 8.0881 -3.2074 -0.8826 32 1 8.0857 -3.2375 0.9016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236250405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:44 Heat of formation + Delta-G solvation = -129.078516 kcal Electronic energy + Delta-G solvation = -18760.786750 eV Core-core repulsion = 15527.338508 eV Total energy + Delta-G solvation = -3233.448242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78086 -40.73010 -39.30409 -38.17477 -36.28658 -34.71473 -33.99627 -32.70557 -30.21571 -28.16827 -26.07065 -23.57108 -23.19195 -21.30612 -20.94900 -20.22273 -18.57303 -18.41700 -17.84059 -17.66872 -17.05519 -16.92816 -16.35090 -15.76936 -15.35133 -15.06117 -14.83379 -14.67188 -14.41311 -14.19528 -14.10798 -13.45138 -13.09371 -12.80599 -12.55666 -12.49053 -12.27838 -12.00592 -11.83326 -11.68846 -11.09302 -10.66327 -10.47564 -10.23209 -9.83642 -8.62163 -6.15809 0.48615 1.28328 1.32669 1.36833 1.41686 1.66282 2.10141 2.24846 2.54384 2.85808 3.06377 3.31677 3.52316 3.74621 3.92424 4.19480 4.29196 4.31128 4.57729 4.76885 4.85217 4.97768 5.18807 5.21328 5.28359 5.74551 5.89416 6.07024 6.26132 6.43436 6.55441 6.79752 7.14359 7.32031 7.62052 8.52277 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.045067 B = 0.004734 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.149918 B = 5913.598099 C = 6358.851232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.248 1.248 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.533 5.533 10 C 0.409 3.591 11 O -0.590 6.590 12 C 0.532 3.468 13 O -0.562 6.562 14 N -0.592 5.592 15 C 0.098 3.902 16 C -0.109 4.109 17 C -0.113 4.113 18 H 0.155 0.845 19 C 0.530 3.470 20 N -0.832 5.832 21 O -0.585 6.585 22 C 0.115 3.885 23 H 0.290 0.710 24 H 0.392 0.608 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.420 0.580 30 H 0.409 0.591 31 H 0.065 0.935 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.557 -6.455 3.243 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.193 4.193 3 Si 0.766 3.234 4 H -0.178 1.178 5 H -0.180 1.180 6 H -0.172 1.172 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.172 5.172 10 C 0.194 3.806 11 O -0.477 6.477 12 C 0.317 3.683 13 O -0.442 6.442 14 N -0.325 5.325 15 C -0.024 4.024 16 C -0.147 4.147 17 C -0.134 4.134 18 H 0.172 0.828 19 C 0.315 3.685 20 N -0.396 5.396 21 O -0.465 6.465 22 C -0.007 4.007 23 H 0.101 0.899 24 H 0.228 0.772 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.251 0.749 30 H 0.241 0.759 31 H 0.083 0.917 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.966 -6.819 2.656 21.264 hybrid contribution 0.184 1.185 -0.021 1.199 sum 20.149 -5.634 2.635 21.087 Atomic orbital electron populations 1.69546 1.07855 1.30328 1.45227 1.26051 0.96341 1.02135 0.94792 0.85612 0.79425 0.77795 0.80528 1.17792 1.17997 1.17185 1.19165 0.80268 0.96087 1.51151 0.90254 1.41686 1.06654 1.07558 1.61272 1.19482 0.88047 0.84725 0.88391 1.90568 1.69877 1.30738 1.56470 1.19650 0.87994 0.83229 0.77441 1.90673 1.70457 1.31269 1.51775 1.48150 1.08006 1.06040 1.70350 1.22736 0.97434 0.79415 1.02836 1.22738 0.91021 1.00033 1.00950 1.22446 0.93481 0.94988 1.02487 0.82766 1.20361 0.85262 0.77712 0.85191 1.43724 1.09007 1.57687 1.29207 1.90758 1.85632 1.42261 1.27846 1.22069 0.79288 0.95532 1.03807 0.89940 0.77213 0.90320 0.89548 0.86675 0.91365 0.74888 0.75903 0.91652 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.69 13.94 21.76 0.30 -50.39 16 2 C 0.01 0.64 5.51 85.14 0.47 1.11 16 3 Si 0.95 39.33 27.74 68.60 1.90 41.24 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.25 -9.74 6.53 99.48 0.65 -9.09 16 7 C -0.34 -19.46 10.16 84.35 0.86 -18.61 16 8 H 0.08 5.23 7.37 -2.91 -0.02 5.21 16 9 N -0.53 -27.28 5.06 -308.87 -1.56 -28.84 16 10 C 0.41 20.00 7.78 87.08 0.68 20.68 16 11 O -0.59 -31.12 13.33 -3.73 -0.05 -31.17 16 12 C 0.53 21.80 7.89 87.08 0.69 22.49 16 13 O -0.56 -23.98 16.80 -3.52 -0.06 -24.04 16 14 N -0.59 -18.83 3.33 -813.97 -2.71 -21.54 16 15 C 0.10 2.79 6.06 86.86 0.53 3.32 16 16 C -0.11 -2.34 6.18 31.99 0.20 -2.14 16 17 C -0.11 -1.80 3.34 -10.33 -0.03 -1.83 16 18 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 19 C 0.53 9.48 7.27 87.66 0.64 10.11 16 20 N -0.83 -7.45 8.87 -173.54 -1.54 -8.99 16 21 O -0.59 -16.30 16.54 -3.04 -0.05 -16.35 16 22 C 0.11 2.47 6.46 86.75 0.56 3.03 16 23 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 24 H 0.39 18.42 5.22 -92.71 -0.48 17.94 16 25 H 0.08 2.83 6.15 -2.39 -0.01 2.81 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.80 7.40 -2.39 -0.02 1.78 16 29 H 0.42 1.10 8.83 -92.71 -0.82 0.28 16 30 H 0.41 3.05 8.93 -92.71 -0.83 2.22 16 31 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.61 279.56 -0.17 -76.78 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.99 Total: 25.14 kcal Atomic # 6 Polarization: 33.58 SS G_CDS: 4.58 Total: 38.16 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -5.51 Total: -109.76 kcal Atomic # 8 Polarization: -71.40 SS G_CDS: -0.16 Total: -71.56 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.24 kcal Total: -76.61 -0.17 -76.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236250405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.296 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds