Wall clock time and date at job start Mon Mar 30 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.87940 * 300.70280 * 9 7 2 11 11 C 1.54329 * 109.88370 * 61.71933 * 9 7 2 12 12 C 1.55159 * 102.94239 * 141.60832 * 11 9 7 13 13 C 1.54906 * 101.58196 * 324.49691 * 12 11 9 14 14 N 1.47027 * 109.88044 * 179.68260 * 9 7 2 15 15 C 1.34774 * 125.64494 * 61.61251 * 14 9 7 16 16 O 1.21278 * 120.00305 * 359.97438 * 15 14 9 17 17 C 1.50701 * 120.00112 * 179.97438 * 15 14 9 18 18 H 1.09007 * 110.35403 * 335.69709 * 17 15 14 19 19 C 1.54267 * 110.40434 * 213.37522 * 17 15 14 20 20 C 1.54021 * 108.84391 * 213.34571 * 19 17 15 21 21 C 1.55130 * 106.98233 * 47.10156 * 20 19 17 22 22 S 1.83091 * 110.40250 * 98.01799 * 17 15 14 23 23 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 24 24 H 1.09000 * 110.71599 * 259.97114 * 11 9 7 25 25 H 1.09000 * 110.72160 * 23.24028 * 11 9 7 26 26 H 1.08999 * 111.00425 * 82.56976 * 12 11 9 27 27 H 1.09000 * 111.00094 * 206.42055 * 12 11 9 28 28 H 1.08996 * 110.36803 * 155.84892 * 13 12 11 29 29 H 1.09004 * 110.36522 * 278.17572 * 13 12 11 30 30 H 1.09003 * 109.60994 * 333.17371 * 19 17 15 31 31 H 1.09006 * 109.61264 * 93.32838 * 19 17 15 32 32 H 1.09003 * 109.88448 * 287.73734 * 20 19 17 33 33 H 1.08999 * 109.97632 * 166.51673 * 20 19 17 34 34 H 1.09006 * 110.85702 * 199.76372 * 21 20 19 35 35 H 1.08997 * 110.85827 * 76.11768 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6129 -2.5578 0.8834 11 6 0.3927 -2.6107 -1.2760 12 6 0.5237 -4.1101 -1.6527 13 6 1.9865 -4.4080 -1.2394 14 7 2.1985 -3.6234 -0.0056 15 6 3.1078 -3.8905 0.9527 16 8 3.1926 -3.1714 1.9256 17 6 4.0191 -5.0828 0.8154 18 1 3.5661 -5.8338 0.1681 19 6 4.3302 -5.6845 2.2014 20 6 5.7629 -6.2496 2.1883 21 6 6.6722 -5.1642 1.5544 22 16 5.6473 -4.5689 0.1541 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.6459 -2.3550 -1.0662 25 1 0.7945 -1.9777 -2.0671 26 1 -0.1758 -4.7193 -1.0803 27 1 0.3824 -4.2576 -2.7234 28 1 2.1147 -5.4715 -1.0377 29 1 2.6749 -4.0833 -2.0197 30 1 4.2504 -4.9090 2.9632 31 1 3.6216 -6.4833 2.4209 32 1 5.7970 -7.1600 1.5897 33 1 6.0893 -6.4607 3.2066 34 1 7.6044 -5.6003 1.1951 35 1 6.8669 -4.3590 2.2628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260072766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:33 Heat of formation + Delta-G solvation = -41.674288 kcal Electronic energy + Delta-G solvation = -17480.359863 eV Core-core repulsion = 14796.994967 eV Total energy + Delta-G solvation = -2683.364895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.33149 -36.97450 -35.39481 -32.98171 -31.01518 -29.67977 -27.91105 -25.32010 -24.35570 -22.42453 -21.12734 -20.07301 -18.81152 -17.27342 -16.76423 -16.24348 -15.57522 -15.14833 -14.41809 -13.90507 -13.69220 -13.53061 -13.03436 -12.79812 -12.55226 -12.18656 -12.10499 -11.86692 -11.60353 -11.39005 -11.17809 -10.89972 -10.67519 -10.49067 -10.40742 -10.03036 -9.94361 -9.87984 -9.16969 -8.88727 -8.30954 -7.58025 -7.52452 -6.29099 -4.00166 1.64557 2.34406 3.48567 3.54886 3.65869 3.68273 3.73291 4.50700 4.59211 4.70046 4.75910 4.96489 5.10133 5.16857 5.21251 5.40503 5.47475 5.48800 5.58540 5.66578 5.70462 5.78576 5.96675 6.13697 6.19423 6.23265 6.56574 6.69202 6.88567 7.27238 7.43043 8.07547 8.44130 8.58558 8.86843 9.01569 9.67408 11.07440 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.023409 B = 0.007387 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.843902 B = 3789.477827 C = 4448.245957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.584 4.584 8 H 0.054 0.946 9 C 0.254 3.746 10 H 0.024 0.976 11 C -0.119 4.119 12 C -0.137 4.137 13 C 0.102 3.898 14 N -0.595 5.595 15 C 0.538 3.462 16 O -0.521 6.521 17 C -0.068 4.068 18 H 0.109 0.891 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.080 4.080 22 S -0.247 6.247 23 H 0.268 0.732 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.643 -14.395 -0.404 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.623 4.623 8 H 0.072 0.928 9 C 0.153 3.847 10 H 0.042 0.958 11 C -0.158 4.158 12 C -0.176 4.176 13 C -0.022 4.022 14 N -0.328 5.328 15 C 0.322 3.678 16 O -0.397 6.397 17 C -0.200 4.200 18 H 0.127 0.873 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.228 4.228 22 S -0.020 6.020 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.855 -11.817 -0.831 14.214 hybrid contribution -0.113 -2.292 0.848 2.446 sum 7.742 -14.109 0.017 16.094 Atomic orbital electron populations 1.70816 1.06718 1.30645 1.47184 1.25724 0.96443 1.02382 0.93680 0.83504 0.74915 0.74982 0.76607 1.21547 1.21425 1.21022 1.22142 0.94717 0.90749 1.54697 0.92763 1.19406 0.87011 0.84902 0.93417 0.95798 1.22905 1.00234 0.92939 0.99761 1.22798 0.95092 0.99108 1.00560 1.22272 0.97449 0.94569 0.87915 1.48605 1.35775 1.29082 1.19312 1.19174 0.80070 0.85565 0.82983 1.90677 1.68916 1.49315 1.30802 1.23927 0.95698 0.99626 1.00724 0.87302 1.22368 0.96617 1.01677 0.95403 1.22563 0.93354 0.98118 1.02093 1.24305 0.99898 1.00819 0.97766 1.87705 1.02324 1.82636 1.29384 0.91990 0.91523 0.90903 0.91696 0.91022 0.92209 0.91837 0.88677 0.89855 0.90438 0.89654 0.87911 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 13.41 55.43 0.74 -26.80 16 2 C 0.02 0.63 5.32 -17.82 -0.09 0.53 16 3 Si 1.07 26.64 29.90 -169.99 -5.08 21.56 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.58 -17.14 7.91 -34.44 -0.27 -17.41 16 8 H 0.05 1.70 7.78 -52.49 -0.41 1.29 16 9 C 0.25 6.52 2.48 -68.10 -0.17 6.35 16 10 H 0.02 0.69 7.99 -51.93 -0.42 0.28 16 11 C -0.12 -2.62 5.31 -24.89 -0.13 -2.75 16 12 C -0.14 -2.29 7.08 -24.58 -0.17 -2.47 16 13 C 0.10 1.76 6.66 -2.35 -0.02 1.74 16 14 N -0.59 -13.16 3.07 -164.06 -0.50 -13.66 16 15 C 0.54 11.80 6.75 -10.99 -0.07 11.73 16 16 O -0.52 -13.64 15.65 5.56 0.09 -13.56 16 17 C -0.07 -1.11 3.31 -27.22 -0.09 -1.20 16 18 H 0.11 1.52 6.41 -51.93 -0.33 1.19 16 19 C -0.12 -1.63 5.92 -25.54 -0.15 -1.78 16 20 C -0.12 -1.25 6.46 -25.07 -0.16 -1.41 16 21 C -0.08 -0.94 7.38 38.28 0.28 -0.65 16 22 S -0.25 -4.01 22.68 -107.50 -2.44 -6.45 16 23 H 0.27 7.86 5.45 -40.82 -0.22 7.64 16 24 H 0.07 1.47 6.92 -51.93 -0.36 1.11 16 25 H 0.07 1.71 7.84 -51.93 -0.41 1.30 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.51 6.94 -51.93 -0.36 1.15 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -34.08 291.83 -8.88 -42.96 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.03 Total: -1.13 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.05 Total: -7.32 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.24 Total: -40.46 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -5.08 Total: 21.56 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.44 Total: -6.45 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.08 -8.88 -42.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.286 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds