Wall clock time and date at job start Mon Mar 30 2020 04:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39248 * 110.99897 * 236.04494 * 2 1 3 5 5 C 1.39447 * 120.86320 * 59.72205 * 4 2 1 6 6 C 1.37905 * 119.08005 * 179.72636 * 5 4 2 7 7 C 1.50700 * 119.57087 * 180.27634 * 6 5 4 8 8 H 1.09000 * 109.47202 * 245.28293 * 7 6 5 9 9 N 1.46901 * 109.46765 * 5.27866 * 7 6 5 10 10 C 1.50692 * 109.47182 * 125.28180 * 7 6 5 11 11 H 1.07997 * 120.00323 * 0.02562 * 10 7 6 12 12 C 1.37882 * 120.00280 * 180.02562 * 10 7 6 13 13 N 1.31507 * 120.00490 * 179.97438 * 12 10 7 14 14 Si 1.86807 * 119.99474 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.46883 * 90.00349 * 14 12 10 16 16 H 1.48503 * 109.46942 * 210.00325 * 14 12 10 17 17 H 1.48500 * 109.47094 * 330.00299 * 14 12 10 18 18 N 1.31997 * 120.86279 * 0.56105 * 6 5 4 19 19 C 1.31989 * 121.91552 * 359.71298 * 18 6 5 20 20 C 1.38007 * 120.82466 * 0.02562 * 19 18 6 21 21 Cl 1.73600 * 120.47401 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 25 25 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 26 26 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 28 28 H 1.08000 * 120.45982 * 0.02562 * 5 4 2 29 29 H 1.00903 * 110.99944 * 60.00337 * 9 7 6 30 30 H 1.00897 * 111.00080 * 183.95267 * 9 7 6 31 31 H 0.97007 * 120.00084 * 179.97438 * 13 12 10 32 32 H 1.08000 * 119.58619 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9680 -0.7261 -1.0783 5 6 1.6609 -0.3625 -2.3890 6 6 2.1797 -1.1042 -3.4295 7 6 1.8600 -0.7173 -4.8504 8 1 1.2683 -1.5048 -5.3171 9 7 1.0964 0.5376 -4.8562 10 6 3.1418 -0.5290 -5.6202 11 1 4.0927 -0.6753 -5.1297 12 6 3.1005 -0.1699 -6.9508 13 7 4.2190 -0.0051 -7.6225 14 14 1.4555 0.0824 -7.7994 15 1 1.0392 1.5010 -7.6602 16 1 1.5843 -0.2567 -9.2395 17 1 0.4355 -0.7966 -7.1732 18 7 2.9480 -2.1520 -3.1969 19 6 3.2575 -2.5321 -1.9713 20 6 2.7832 -1.8402 -0.8754 21 17 3.1954 -2.3485 0.7325 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 0.5740 0.8525 25 1 1.6461 1.8947 0.8901 26 1 3.0851 1.3422 0.0005 27 1 1.6460 1.8948 -0.8900 28 1 1.0295 0.4911 -2.5868 29 1 1.6239 1.2839 -4.4286 30 1 0.8143 0.7849 -5.7928 31 1 4.1899 0.2472 -8.5587 32 1 3.8891 -3.3957 -1.8244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260540188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:45 Heat of formation + Delta-G solvation = 26.914559 kcal Electronic energy + Delta-G solvation = -16866.502932 eV Core-core repulsion = 14080.528223 eV Total energy + Delta-G solvation = -2785.974710 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63403 -38.53424 -37.53654 -36.73563 -34.06395 -32.08729 -31.39221 -28.52822 -28.37063 -26.16676 -25.19627 -23.28256 -21.47806 -19.23931 -18.33180 -18.10258 -16.97470 -16.67889 -16.31318 -16.09589 -15.57324 -15.09345 -14.95586 -14.73787 -14.37243 -13.73698 -13.64364 -13.22797 -12.98257 -12.91074 -12.84225 -12.65480 -12.55199 -12.19383 -11.95014 -11.68820 -10.91831 -10.49987 -10.43830 -9.82027 -9.62162 -9.46780 -8.38837 -6.47440 -0.00122 0.11817 1.14745 1.23109 1.33567 1.41921 2.21317 2.66341 2.69497 2.91577 3.31060 3.77015 3.86377 4.07548 4.17272 4.34188 4.40855 4.55258 4.57380 4.62952 4.76187 4.92682 4.97634 4.99611 5.07779 5.32434 5.45629 5.82473 5.98325 6.08891 6.27677 6.48361 6.64153 7.08059 7.17324 8.77930 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.006466 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.886161 B = 4328.972109 C = 4880.381110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.507 5.507 3 C 0.027 3.973 4 C 0.138 3.862 5 C -0.177 4.177 6 C 0.161 3.839 7 C 0.225 3.775 8 H 0.052 0.948 9 N -0.831 5.831 10 C -0.538 4.538 11 H 0.030 0.970 12 C 0.015 3.985 13 N -0.939 5.939 14 Si 0.940 3.060 15 H -0.248 1.248 16 H -0.293 1.293 17 H -0.247 1.247 18 N -0.494 5.494 19 C 0.109 3.891 20 C -0.088 4.088 21 Cl -0.037 7.037 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.160 0.840 29 H 0.340 0.660 30 H 0.324 0.676 31 H 0.269 0.731 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 1.380 15.994 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.228 5.228 3 C -0.119 4.119 4 C 0.035 3.965 5 C -0.200 4.200 6 C 0.024 3.976 7 C 0.115 3.885 8 H 0.069 0.931 9 N -0.365 5.365 10 C -0.578 4.578 11 H 0.048 0.952 12 C -0.184 4.184 13 N -0.578 5.578 14 Si 0.764 3.236 15 H -0.173 1.173 16 H -0.220 1.220 17 H -0.171 1.171 18 N -0.204 5.204 19 C -0.050 4.050 20 C -0.118 4.118 21 Cl -0.008 7.008 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.177 0.823 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.517 0.315 16.171 18.280 hybrid contribution 0.308 1.057 -1.432 1.806 sum -8.209 1.372 14.739 16.927 Atomic orbital electron populations 1.22553 0.83931 1.03099 1.02405 1.59635 1.10047 1.15097 1.38047 1.22537 1.00531 0.86201 1.02668 1.19012 0.94466 0.93209 0.89836 1.22559 1.02902 1.02937 0.91569 1.21210 0.90170 0.89771 0.96422 1.18035 0.91738 0.90324 0.88447 0.93051 1.59591 1.46303 1.06334 1.24302 1.21624 0.92935 1.47191 0.96018 0.95161 1.25927 1.00502 0.94263 0.97678 1.70047 1.29202 1.48299 1.10229 0.85943 0.79718 0.80429 0.77505 1.17281 1.21975 1.17052 1.67583 1.13077 1.16431 1.23316 1.23080 0.97272 0.99172 0.85460 1.22093 1.03117 0.98366 0.88242 1.98329 1.92133 1.89844 1.20523 0.91596 0.94497 0.88051 0.87904 0.92136 0.94482 0.82256 0.84731 0.85948 0.92191 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.35 127.69 1.19 1.71 16 2 N -0.51 -12.19 4.49 -744.32 -3.34 -15.53 16 3 C 0.03 0.55 9.34 127.69 1.19 1.74 16 4 C 0.14 4.19 4.73 38.57 0.18 4.37 16 5 C -0.18 -6.09 7.81 22.48 0.18 -5.92 16 6 C 0.16 6.83 6.11 42.45 0.26 7.09 16 7 C 0.23 10.48 2.72 43.42 0.12 10.59 16 8 H 0.05 2.52 7.20 -2.39 -0.02 2.50 16 9 N -0.83 -32.75 7.89 -174.96 -1.38 -34.13 16 10 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 11 H 0.03 1.96 7.92 -2.91 -0.02 1.94 16 12 C 0.02 0.87 5.47 84.66 0.46 1.33 16 13 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 14 Si 0.94 41.71 24.61 68.60 1.69 43.40 16 15 H -0.25 -9.90 7.01 99.48 0.70 -9.20 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 18 N -0.49 -21.28 9.96 -184.10 -1.83 -23.11 16 19 C 0.11 3.78 10.98 84.61 0.93 4.71 16 20 C -0.09 -2.73 6.36 22.53 0.14 -2.58 16 21 Cl -0.04 -0.96 28.55 -2.72 -0.08 -1.03 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 0.74 7.18 -2.39 -0.02 0.72 16 24 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.04 0.76 7.57 -2.39 -0.02 0.75 16 28 H 0.16 5.00 5.79 -2.91 -0.02 4.98 16 29 H 0.34 12.69 8.27 -89.69 -0.74 11.95 16 30 H 0.32 12.81 4.30 -89.70 -0.39 12.43 16 31 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16 32 H 0.18 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -65.80 279.23 0.21 -65.59 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.04 Total: 29.21 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.89 Total: -7.13 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -6.25 Total: -130.04 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.69 Total: 43.40 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Total: -65.80 0.21 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260540188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.509 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds