Wall clock time and date at job start Mon Mar 30 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48499 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47198 * 300.00439 * 3 2 1 6 6 H 1.48508 * 109.46958 * 60.00282 * 3 2 1 7 7 C 1.37873 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00238 * 186.06584 * 7 2 1 9 9 C 1.50707 * 119.99924 * 6.34722 * 7 2 1 10 10 C 1.52999 * 115.54590 * 274.80154 * 9 7 2 11 11 S 1.81404 * 109.47182 * 294.76343 * 10 9 7 12 12 C 1.81398 * 102.99929 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47140 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99982 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99938 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99830 * 180.02562 * 15 13 12 17 17 C 1.52995 * 117.49410 * 223.74316 * 16 15 13 18 18 C 1.52998 * 117.49827 * 155.08312 * 16 15 13 19 19 C 1.52992 * 117.50144 * 129.13240 * 9 7 2 20 20 C 1.52993 * 117.49829 * 60.47049 * 9 7 2 21 21 H 0.97002 * 120.00152 * 2.28383 * 1 2 3 22 22 H 1.08999 * 109.47512 * 54.76459 * 10 9 7 23 23 H 1.09001 * 109.47273 * 174.76588 * 10 9 7 24 24 H 1.09004 * 109.47093 * 300.00406 * 12 11 10 25 25 H 1.08995 * 109.47225 * 59.99978 * 12 11 10 26 26 H 0.97000 * 120.00234 * 359.97438 * 15 13 12 27 27 H 1.08998 * 115.54636 * 9.40565 * 16 15 13 28 28 H 1.09001 * 117.50421 * 359.97438 * 17 16 15 29 29 H 1.09004 * 117.49808 * 145.01945 * 17 16 15 30 30 H 1.08997 * 117.49928 * 214.97380 * 18 16 15 31 31 H 1.09002 * 117.49951 * 359.97247 * 18 16 15 32 32 H 1.09009 * 117.49997 * 359.97438 * 19 9 7 33 33 H 1.08995 * 117.50336 * 145.01721 * 19 9 7 34 34 H 1.09003 * 117.49914 * 214.98096 * 20 9 7 35 35 H 1.09000 * 117.50387 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1967 0.0983 9 6 1.2580 -2.4951 -0.1454 10 6 0.6996 -3.0834 1.1519 11 16 2.0711 -3.5455 2.2457 12 6 1.2230 -4.2119 3.7042 13 6 2.2439 -4.6468 4.7239 14 8 3.4271 -4.5202 4.4895 15 7 1.8420 -5.1774 5.8959 16 6 2.8345 -5.5997 6.8873 17 6 2.6091 -6.9427 7.5846 18 6 2.3975 -5.6359 8.3531 19 6 1.7482 -3.4759 -1.2123 20 6 0.4436 -2.7037 -1.4237 21 1 -0.4850 0.8394 -0.0335 22 1 0.0738 -2.3414 1.6476 23 1 0.1037 -3.9670 0.9233 24 1 0.5837 -3.4418 4.1362 25 1 0.6142 -5.0672 3.4114 26 1 0.8957 -5.2790 6.0832 27 1 3.8634 -5.3088 6.6758 28 1 1.7223 -7.5120 7.3060 29 1 3.4899 -7.5353 7.8323 30 1 3.1391 -5.3693 9.1061 31 1 1.3718 -5.3451 8.5799 32 1 2.6105 -3.1800 -1.8099 33 1 1.6726 -4.5403 -0.9903 34 1 -0.4899 -3.2604 -1.3405 35 1 0.4474 -1.8998 -2.1597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308778891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:42 Heat of formation + Delta-G solvation = -7.358684 kcal Electronic energy + Delta-G solvation = -16093.208826 eV Core-core repulsion = 13411.331967 eV Total energy + Delta-G solvation = -2681.876859 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78514 -38.39748 -38.01906 -34.03934 -33.97859 -30.72919 -29.29863 -27.33588 -23.30245 -23.24324 -22.89966 -21.83633 -21.08568 -18.47179 -18.06189 -17.56942 -16.68441 -16.56711 -16.50729 -15.67934 -15.45865 -15.06018 -14.90361 -14.36789 -14.06225 -13.67903 -13.51292 -13.10423 -12.93160 -12.81400 -12.49658 -12.35570 -12.34459 -12.00407 -11.50833 -11.47117 -11.08618 -10.91111 -10.66693 -10.43962 -9.81013 -9.78918 -8.39033 -8.10385 -6.18850 0.68785 1.39051 1.42665 1.46181 1.53744 1.92455 2.10145 2.44983 2.98255 3.18979 3.56468 3.69466 3.81901 4.04830 4.08067 4.14308 4.22804 4.29825 4.45771 4.63570 4.71336 4.77071 4.81295 4.97186 5.02763 5.02850 5.21671 5.25492 5.47823 5.61993 5.65336 5.79873 6.41585 6.41809 6.84448 7.15297 7.48627 8.98112 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.004536 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.752979 B = 6171.326183 C = 6687.147584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.497 4.497 8 H 0.042 0.958 9 C 0.027 3.973 10 C -0.026 4.026 11 S -0.235 6.235 12 C -0.124 4.124 13 C 0.535 3.465 14 O -0.564 6.564 15 N -0.685 5.685 16 C 0.046 3.954 17 C -0.179 4.179 18 C -0.170 4.170 19 C -0.187 4.187 20 C -0.147 4.147 21 H 0.260 0.740 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.419 0.581 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -12.487 14.213 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.168 4.168 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.174 4.174 11 S -0.008 6.008 12 C -0.275 4.275 13 C 0.321 3.679 14 O -0.442 6.442 15 N -0.337 5.337 16 C -0.060 4.060 17 C -0.218 4.218 18 C -0.208 4.208 19 C -0.224 4.224 20 C -0.186 4.186 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.141 0.859 25 H 0.152 0.848 26 H 0.256 0.744 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.480 -12.173 13.930 18.506 hybrid contribution -1.347 1.046 0.033 1.705 sum -1.826 -11.127 13.962 17.947 Atomic orbital electron populations 1.70080 1.06600 1.26985 1.50420 1.25499 0.95540 1.01321 0.94440 0.85777 0.79162 0.80722 0.77654 1.20024 1.20301 1.20683 1.20575 0.92328 0.90387 1.50251 0.94026 1.18529 0.99218 0.93918 0.85810 1.22898 0.96116 1.00550 0.97855 1.87774 1.16417 1.80692 1.15928 1.23439 1.01114 1.06241 0.96668 1.19962 0.88834 0.76537 0.82591 1.90726 1.19611 1.55514 1.78385 1.45114 1.10537 1.62705 1.15299 1.21651 0.93871 1.02156 0.88283 1.23516 1.04802 0.90820 1.02651 1.23485 1.04178 1.00520 0.92658 1.23004 0.97465 0.96679 1.05261 1.22512 0.93555 1.01023 1.01553 0.93106 0.92078 0.91028 0.85924 0.84764 0.74359 0.87016 0.87311 0.87289 0.86973 0.86960 0.90848 0.88985 0.89993 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.68 12.92 21.45 0.28 -50.41 16 2 C 0.03 1.79 5.39 84.65 0.46 2.25 16 3 Si 0.94 44.56 29.54 68.60 2.03 46.59 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.50 -27.84 8.49 25.60 0.22 -27.62 16 8 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 9 C 0.03 1.32 1.33 -52.93 -0.07 1.25 16 10 C -0.03 -1.12 5.80 71.98 0.42 -0.71 16 11 S -0.24 -9.86 20.57 -56.49 -1.16 -11.02 16 12 C -0.12 -3.52 6.42 71.24 0.46 -3.06 16 13 C 0.53 15.89 7.85 87.66 0.69 16.58 16 14 O -0.56 -22.60 15.43 -3.03 -0.05 -22.65 16 15 N -0.68 -13.71 5.57 -442.53 -2.46 -16.17 16 16 C 0.05 0.88 6.43 44.99 0.29 1.17 16 17 C -0.18 -2.25 10.46 30.62 0.32 -1.93 16 18 C -0.17 -2.02 10.46 30.62 0.32 -1.70 16 19 C -0.19 -8.13 9.96 30.61 0.30 -7.82 16 20 C -0.15 -6.72 9.43 30.62 0.29 -6.43 16 21 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 22 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 23 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 24 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.42 5.25 8.83 -92.71 -0.82 4.43 16 27 H 0.11 2.73 7.40 -2.39 -0.02 2.72 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 33 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -69.23 317.38 2.58 -66.65 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.26 Total: 15.05 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.69 Total: -28.04 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -2.19 Total: -66.58 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -9.86 SS G_CDS: -1.16 Total: -11.02 kcal Total: -69.23 2.58 -66.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308778891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.293 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds