Wall clock time and date at job start Mon Mar 30 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47197 * 2 1 4 4 N 1.46905 * 109.47138 * 240.00534 * 2 1 3 5 5 C 1.46892 * 111.00276 * 84.99884 * 4 2 1 6 6 C 1.50697 * 109.47142 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00349 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00128 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99971 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00166 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47190 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47100 * 119.99797 * 10 8 6 13 13 H 1.48495 * 109.47363 * 240.00136 * 10 8 6 14 14 C 1.50693 * 109.47173 * 119.99895 * 2 1 3 15 15 O 1.21290 * 120.00035 * 119.99636 * 14 2 1 16 16 N 1.34778 * 120.00334 * 300.00710 * 14 2 1 17 17 C 1.39002 * 120.00122 * 179.97438 * 16 14 2 18 18 N 1.29624 * 124.94557 * 359.69134 * 17 16 14 19 19 C 1.31985 * 116.91910 * 180.26550 * 18 17 16 20 20 C 1.33443 * 114.57002 * 359.97438 * 19 18 17 21 21 S 1.70968 * 124.94431 * 179.97438 * 17 16 14 22 22 H 1.09008 * 109.46878 * 59.99980 * 1 2 3 23 23 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47374 * 299.99646 * 1 2 3 25 25 H 1.00897 * 110.99854 * 321.04000 * 4 2 1 26 26 H 1.09006 * 109.47048 * 300.00086 * 5 4 2 27 27 H 1.09004 * 109.47440 * 60.00030 * 5 4 2 28 28 H 0.96999 * 120.00128 * 179.97438 * 9 8 6 29 29 H 0.96995 * 120.00029 * 359.97438 * 16 14 2 30 30 H 1.07998 * 122.71663 * 180.02562 * 19 18 17 31 31 H 1.07991 * 125.97016 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5873 -0.5217 -3.5560 7 1 2.8370 -1.5696 -3.4797 8 6 2.7315 0.1354 -4.7596 9 7 2.4279 1.4117 -4.8524 10 14 3.3580 -0.7870 -6.2582 11 1 3.6255 -2.2013 -5.8929 12 1 2.3341 -0.7391 -7.3327 13 1 4.6118 -0.1543 -6.7406 14 6 2.0323 -0.7104 1.2304 15 8 2.7296 -1.6965 1.1191 16 7 1.7067 -0.2500 2.4546 17 6 2.1696 -0.9056 3.5895 18 7 2.9130 -1.9675 3.5822 19 6 3.2577 -2.4635 4.7557 20 6 2.7835 -1.7884 5.8045 21 16 1.8357 -0.4327 5.1982 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.4496 -1.4978 -1.4101 26 1 1.0870 0.6164 -2.5525 27 1 2.7589 1.0463 -2.1182 28 1 2.5297 1.8741 -5.6990 29 1 1.1492 0.5388 2.5436 30 1 3.8744 -3.3441 4.8588 31 1 2.9508 -2.0311 6.8434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380131176.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:34 Heat of formation + Delta-G solvation = 25.212234 kcal Electronic energy + Delta-G solvation = -16105.787457 eV Core-core repulsion = 13321.782635 eV Total energy + Delta-G solvation = -2784.004822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43250 -38.86894 -35.74216 -34.76584 -32.73499 -30.22949 -29.19132 -26.10142 -25.61112 -23.62827 -21.97628 -21.10997 -19.34634 -18.92902 -16.95166 -16.43296 -16.03063 -15.54210 -15.04414 -14.79694 -14.30155 -14.02529 -13.66987 -13.50083 -13.29976 -12.30987 -12.26171 -11.96183 -11.67958 -11.39151 -11.17281 -10.80840 -10.77292 -10.66298 -10.06095 -9.94268 -9.43143 -9.32609 -9.04525 -8.51188 -8.32924 -7.37329 -6.05816 -4.06993 0.67780 0.88640 1.54732 2.67000 2.88324 3.15988 3.31904 3.39313 3.45994 4.34406 4.45275 4.99144 5.05457 5.11805 5.28619 5.31298 5.40293 5.43030 5.79613 5.83933 5.95307 6.24179 6.26693 6.97185 7.14093 7.32588 7.73907 7.83941 8.06004 8.29799 8.35443 8.53016 9.02389 9.58140 11.05370 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.050015 B = 0.003907 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.699782 B = 7165.236909 C = 7531.494542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 H 0.104 0.896 4 N -0.666 5.666 5 C 0.196 3.804 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.900 3.100 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.507 3.493 15 O -0.442 6.442 16 N -0.642 5.642 17 C 0.288 3.712 18 N -0.482 5.482 19 C 0.074 3.926 20 C -0.286 4.286 21 S 0.097 5.903 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.339 0.661 26 H -0.008 1.008 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.419 0.581 30 H 0.178 0.822 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -0.824 20.881 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.040 4.040 3 H 0.121 0.879 4 N -0.297 5.297 5 C 0.070 3.930 6 C -0.552 4.552 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.290 3.710 15 O -0.306 6.306 16 N -0.295 5.295 17 C -0.081 4.081 18 N -0.204 5.204 19 C -0.077 4.077 20 C -0.426 4.426 21 S 0.345 5.655 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.157 0.843 26 H 0.009 0.991 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.256 0.744 30 H 0.195 0.805 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.133 -0.748 20.598 21.022 hybrid contribution -0.335 -0.539 -0.825 1.041 sum -4.468 -1.287 19.773 20.313 Atomic orbital electron populations 1.22506 0.95613 1.02744 1.02900 1.21411 0.93455 0.98731 0.90426 0.87856 1.60320 1.55647 1.10278 1.03464 1.19647 0.95527 0.91637 0.86174 1.21209 1.43450 0.97174 0.93335 0.91687 1.24970 0.95559 0.94944 0.99043 1.69960 1.48995 1.08986 1.25922 0.86402 0.78404 0.80121 0.82291 1.19554 1.21096 1.20970 1.21631 0.80718 0.85562 0.83108 1.90799 1.31813 1.23280 1.84728 1.43606 1.52086 1.30819 1.02984 1.23954 0.97755 0.94427 0.91959 1.66603 1.15514 1.10388 1.27875 1.21726 1.00036 1.00901 0.85057 1.26718 1.09976 1.01332 1.04560 1.83878 1.51988 1.30582 0.99018 0.90532 0.92052 0.92608 0.84296 0.99067 0.95261 0.92943 0.74378 0.80546 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.06 37.16 0.34 -2.03 16 2 C 0.08 1.26 3.00 -68.86 -0.21 1.05 16 3 H 0.10 1.65 7.80 -51.93 -0.40 1.24 16 4 N -0.67 -14.51 5.73 -109.22 -0.63 -15.14 16 5 C 0.20 5.01 5.24 -4.98 -0.03 4.98 16 6 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.51 8.66 7.19 -10.99 -0.08 8.58 16 15 O -0.44 -9.66 15.07 5.55 0.08 -9.58 16 16 N -0.64 -8.30 5.30 -13.07 -0.07 -8.36 16 17 C 0.29 3.94 8.02 -87.35 -0.70 3.24 16 18 N -0.48 -7.74 8.65 -15.12 -0.13 -7.87 16 19 C 0.07 0.89 11.34 -19.16 -0.22 0.67 16 20 C -0.29 -2.67 11.35 29.06 0.33 -2.35 16 21 S 0.10 0.92 23.22 -107.50 -2.50 -1.58 16 22 H 0.08 1.10 7.45 -51.92 -0.39 0.71 16 23 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 24 H 0.05 0.54 7.56 -51.93 -0.39 0.14 16 25 H 0.34 7.24 8.46 -39.29 -0.33 6.91 16 26 H -0.01 -0.22 7.44 -51.93 -0.39 -0.60 16 27 H 0.03 0.80 8.06 -51.93 -0.42 0.38 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.42 3.67 8.24 -40.82 -0.34 3.33 16 30 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -34.90 287.44 -7.64 -42.54 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.47 Total: 3.84 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.98 Total: 0.73 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.09 Total: -57.14 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.90 -7.64 -42.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380131176.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.752 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds