Wall clock time and date at job start Mon Mar 30 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00239 * 3 2 1 6 6 H 1.48497 * 109.47270 * 59.99876 * 3 2 1 7 7 C 1.37877 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46153 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31169 * 178.62983 * 10 9 7 12 12 N 1.46917 * 108.77572 * 54.63312 * 11 10 9 13 13 C 1.34781 * 120.62959 * 126.37265 * 12 11 10 14 14 O 1.21372 * 119.99775 * 5.03163 * 13 12 11 15 15 C 1.49177 * 119.99934 * 185.03980 * 13 12 11 16 16 O 1.20808 * 120.00243 * 274.76266 * 15 13 12 17 17 C 1.49165 * 120.00346 * 94.75762 * 15 13 12 18 18 O 1.21279 * 119.99236 * 0.02562 * 17 15 13 19 19 O 1.34569 * 120.00294 * 179.72409 * 17 15 13 20 20 C 1.46924 * 118.73960 * 306.64147 * 12 11 10 21 21 C 1.52765 * 109.00767 * 53.31565 * 20 12 11 22 22 H 0.96996 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.45657 * 299.97007 * 9 7 2 24 24 H 1.09001 * 109.49983 * 58.67316 * 10 9 7 25 25 H 1.09003 * 109.52523 * 298.59575 * 10 9 7 26 26 H 1.09002 * 109.58413 * 294.84209 * 11 10 9 27 27 H 1.09004 * 109.70012 * 174.49099 * 11 10 9 28 28 H 0.96702 * 117.00528 * 180.27852 * 19 17 15 29 29 H 1.09000 * 109.58549 * 173.14222 * 20 12 11 30 30 H 1.09000 * 109.59086 * 293.57064 * 20 12 11 31 31 H 1.09004 * 109.56404 * 185.55354 * 21 20 12 32 32 H 1.09002 * 109.38901 * 65.51187 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0340 12 7 0.5225 -5.0087 -1.0829 13 6 0.5123 -6.0345 -1.9572 14 8 1.2323 -6.9944 -1.7749 15 6 -0.3839 -5.9898 -3.1489 16 8 -1.5315 -6.3558 -3.0558 17 6 0.1368 -5.4933 -4.4556 18 8 1.2889 -5.1263 -4.5491 19 8 -0.6701 -5.4582 -5.5320 20 6 -0.4164 -3.8885 -1.2322 21 6 0.3702 -2.5790 -1.2495 22 1 -0.4850 0.8400 0.0004 23 1 0.6252 -2.5572 0.8900 24 1 2.8882 -3.5915 0.8772 25 1 2.8562 -3.6195 -0.9026 26 1 0.9371 -5.0714 0.9774 27 1 2.1736 -5.8190 -0.0642 28 1 -0.2866 -5.1325 -6.3578 29 1 -0.9665 -3.9950 -2.1672 30 1 -1.1135 -3.8817 -0.3943 31 1 -0.3224 -1.7373 -1.2607 32 1 0.9978 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381031697.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:44 Heat of formation + Delta-G solvation = -149.014902 kcal Electronic energy + Delta-G solvation = -19323.845022 eV Core-core repulsion = 16057.239523 eV Total energy + Delta-G solvation = -3266.605499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.34889 -39.83693 -38.79660 -37.13488 -36.46148 -33.72412 -31.49231 -30.37713 -28.03819 -26.31054 -24.07822 -22.72886 -22.16059 -20.03671 -18.92691 -18.56775 -17.75305 -17.29412 -16.56769 -16.34744 -15.87511 -14.88231 -14.62284 -14.43414 -14.07482 -13.87409 -13.30109 -12.95441 -12.93318 -12.52003 -12.32362 -11.90334 -11.80215 -11.50391 -11.16783 -11.01689 -10.71063 -10.50229 -10.20835 -9.82289 -9.61892 -9.31696 -9.09156 -8.49633 -8.33230 -6.10970 -4.16893 0.27724 1.64970 2.27894 2.50121 3.23463 3.24245 3.32445 3.36415 4.11506 4.35580 4.46868 5.14919 5.25011 5.58235 5.72893 5.85704 5.94607 5.96975 6.01583 6.20129 6.25764 6.47976 6.64953 6.87304 6.95014 7.07850 7.37935 7.40940 7.57691 7.78634 7.84088 7.95092 8.30491 8.86711 9.48978 10.94986 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.006179 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.719665 B = 4530.254409 C = 4953.005172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.125 4.125 11 C 0.111 3.889 12 N -0.573 5.573 13 C 0.509 3.491 14 O -0.513 6.513 15 C 0.377 3.623 16 O -0.356 6.356 17 C 0.452 3.548 18 O -0.454 6.454 19 O -0.491 6.491 20 C 0.098 3.902 21 C -0.127 4.127 22 H 0.261 0.739 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.420 0.580 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -8.037 -6.262 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.029 3.971 10 C -0.163 4.163 11 C -0.009 4.009 12 N -0.306 5.306 13 C 0.291 3.709 14 O -0.391 6.391 15 C 0.239 3.761 16 O -0.220 6.220 17 C 0.288 3.712 18 O -0.339 6.339 19 O -0.303 6.303 20 C -0.023 4.023 21 C -0.165 4.165 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.280 0.720 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.409 -8.648 -5.754 10.663 hybrid contribution 0.614 1.276 -0.760 1.607 sum -1.796 -7.372 -6.515 10.000 Atomic orbital electron populations 1.69824 1.05875 1.26523 1.50890 1.24965 0.94891 0.99172 0.94965 0.86537 0.80210 0.83697 0.77588 1.19774 1.21057 1.21006 1.21215 0.93072 0.90353 1.50288 0.92447 1.18660 0.92631 0.91993 0.93797 1.22055 0.98993 0.93581 1.01691 1.21940 0.91353 1.00507 0.87136 1.48312 1.35624 1.19519 1.27133 1.19581 0.83375 0.84524 0.83409 1.90812 1.40578 1.32615 1.75054 1.24166 0.88438 0.75376 0.88107 1.90538 1.17139 1.29058 1.85302 1.23522 0.84451 0.76930 0.86281 1.90960 1.18046 1.40323 1.84561 1.84629 1.45997 1.78582 1.21109 1.22159 0.91638 0.87727 1.00771 1.22026 1.00287 0.93962 1.00239 0.92928 0.95106 0.91399 0.92423 0.91059 0.89698 0.72000 0.92618 0.90269 0.87194 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.31 55.43 0.63 -23.08 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.12 8.56 -34.44 -0.29 -13.42 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.08 2.07 -91.73 -0.19 0.89 16 10 C -0.13 -2.40 5.30 -26.61 -0.14 -2.54 16 11 C 0.11 1.89 6.42 -3.71 -0.02 1.87 16 12 N -0.57 -10.01 2.98 -173.65 -0.52 -10.52 16 13 C 0.51 8.92 7.10 -11.71 -0.08 8.83 16 14 O -0.51 -9.97 16.53 5.48 0.09 -9.88 16 15 C 0.38 5.81 4.98 -30.50 -0.15 5.66 16 16 O -0.36 -5.59 17.67 -7.58 -0.13 -5.73 16 17 C 0.45 6.29 8.38 35.27 0.30 6.59 16 18 O -0.45 -7.44 17.45 -19.09 -0.33 -7.77 16 19 O -0.49 -5.05 13.29 -45.25 -0.60 -5.65 16 20 C 0.10 1.71 6.33 -3.93 -0.02 1.69 16 21 C -0.13 -2.68 5.14 -26.83 -0.14 -2.82 16 22 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.40 7.03 -51.93 -0.37 1.03 16 28 H 0.42 2.07 9.11 45.56 0.42 2.48 16 29 H 0.06 0.87 6.30 -51.93 -0.33 0.55 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.11 2.59 6.03 -51.93 -0.31 2.28 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -29.90 283.03 -5.14 -35.03 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.67 Total: -0.27 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.85 Total: 8.24 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.11 Total: -33.60 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.98 Total: -29.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.90 -5.14 -35.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381031697.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.981 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds