Wall clock time and date at job start Mon Mar 30 2020 04:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00239 * 3 2 1 6 6 H 1.48497 * 109.47270 * 59.99876 * 3 2 1 7 7 C 1.37877 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46153 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31169 * 178.62983 * 10 9 7 12 12 N 1.46917 * 108.77572 * 54.63312 * 11 10 9 13 13 C 1.34781 * 120.62959 * 126.37265 * 12 11 10 14 14 O 1.21372 * 119.99775 * 5.03163 * 13 12 11 15 15 C 1.49177 * 119.99934 * 185.03980 * 13 12 11 16 16 O 1.20808 * 120.00243 * 274.76266 * 15 13 12 17 17 C 1.49165 * 120.00346 * 94.75762 * 15 13 12 18 18 O 1.21279 * 119.99236 * 0.02562 * 17 15 13 19 19 O 1.34569 * 120.00294 * 179.72409 * 17 15 13 20 20 C 1.46924 * 118.73960 * 306.64147 * 12 11 10 21 21 C 1.52765 * 109.00767 * 53.31565 * 20 12 11 22 22 H 0.96996 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.45657 * 299.97007 * 9 7 2 24 24 H 1.09001 * 109.49983 * 58.67316 * 10 9 7 25 25 H 1.09003 * 109.52523 * 298.59575 * 10 9 7 26 26 H 1.09002 * 109.58413 * 294.84209 * 11 10 9 27 27 H 1.09004 * 109.70012 * 174.49099 * 11 10 9 28 28 H 0.96702 * 117.00528 * 180.27852 * 19 17 15 29 29 H 1.09000 * 109.58549 * 173.14222 * 20 12 11 30 30 H 1.09000 * 109.59086 * 293.57064 * 20 12 11 31 31 H 1.09004 * 109.56404 * 185.55354 * 21 20 12 32 32 H 1.09002 * 109.38901 * 65.51187 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0340 12 7 0.5225 -5.0087 -1.0829 13 6 0.5123 -6.0345 -1.9572 14 8 1.2323 -6.9944 -1.7749 15 6 -0.3839 -5.9898 -3.1489 16 8 -1.5315 -6.3558 -3.0558 17 6 0.1368 -5.4933 -4.4556 18 8 1.2889 -5.1263 -4.5491 19 8 -0.6701 -5.4582 -5.5320 20 6 -0.4164 -3.8885 -1.2322 21 6 0.3702 -2.5790 -1.2495 22 1 -0.4850 0.8400 0.0004 23 1 0.6252 -2.5572 0.8900 24 1 2.8882 -3.5915 0.8772 25 1 2.8562 -3.6195 -0.9026 26 1 0.9371 -5.0714 0.9774 27 1 2.1736 -5.8190 -0.0642 28 1 -0.2866 -5.1325 -6.3578 29 1 -0.9665 -3.9950 -2.1672 30 1 -1.1135 -3.8817 -0.3943 31 1 -0.3224 -1.7373 -1.2607 32 1 0.9978 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381031697.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:43 Heat of formation + Delta-G solvation = -169.019926 kcal Electronic energy + Delta-G solvation = -19324.712505 eV Core-core repulsion = 16057.239523 eV Total energy + Delta-G solvation = -3267.472982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.58152 -41.05293 -40.08541 -38.65783 -37.47585 -35.47493 -33.20919 -31.94413 -29.37276 -27.94980 -25.55017 -24.28863 -23.60756 -21.49741 -20.28142 -19.66837 -19.13954 -18.56728 -18.22359 -17.81779 -17.11456 -16.50544 -16.23923 -15.70847 -15.31872 -15.11613 -14.96588 -14.60034 -14.49192 -14.07342 -13.57695 -13.34072 -13.21856 -12.90325 -12.83646 -12.48534 -12.42945 -12.17597 -11.97687 -11.50992 -11.07771 -11.03661 -10.81427 -10.41126 -9.86800 -8.08325 -6.20153 -0.91410 0.44935 1.07314 1.24625 1.41196 1.45508 1.54638 1.96567 2.45058 2.81151 3.19289 3.50309 3.81484 4.17008 4.25523 4.33615 4.52759 4.53223 4.74986 4.87131 4.91591 5.10234 5.16477 5.21157 5.32785 5.39752 5.63425 5.96385 5.99666 6.08423 6.38900 6.46187 6.53905 6.89257 7.47858 8.95728 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.006179 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.719665 B = 4530.254409 C = 4953.005172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.115 3.885 12 N -0.576 5.576 13 C 0.506 3.494 14 O -0.535 6.535 15 C 0.380 3.620 16 O -0.356 6.356 17 C 0.467 3.533 18 O -0.483 6.483 19 O -0.476 6.476 20 C 0.108 3.892 21 C -0.117 4.117 22 H 0.262 0.738 23 H 0.013 0.987 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.446 0.554 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -8.441 -6.946 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.154 4.154 11 C -0.006 4.006 12 N -0.308 5.308 13 C 0.290 3.710 14 O -0.413 6.413 15 C 0.243 3.757 16 O -0.220 6.220 17 C 0.304 3.696 18 O -0.370 6.370 19 O -0.291 6.291 20 C -0.013 4.013 21 C -0.156 4.156 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.311 0.689 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.770 -9.052 -6.470 11.466 hybrid contribution 0.697 1.400 -0.588 1.671 sum -2.074 -7.652 -7.058 10.614 Atomic orbital electron populations 1.69925 1.06729 1.27086 1.51381 1.25600 0.95669 1.01853 0.94931 0.85685 0.79099 0.80427 0.77502 1.19665 1.20862 1.20718 1.21557 0.93014 0.92071 1.50243 0.93255 1.18642 0.93099 0.92167 0.93588 1.21896 0.98363 0.93635 1.01473 1.21916 0.91562 0.99169 0.87924 1.48337 1.35635 1.19556 1.27310 1.19925 0.83326 0.84037 0.83757 1.90797 1.41633 1.33330 1.75562 1.23910 0.88008 0.75458 0.88366 1.90545 1.17019 1.29035 1.85449 1.22972 0.83958 0.76215 0.86437 1.90969 1.19202 1.41867 1.84982 1.84569 1.45138 1.77911 1.21491 1.22005 0.91172 0.85780 1.02368 1.21767 0.99619 0.95312 0.98857 0.92917 0.96915 0.90606 0.93635 0.89293 0.88893 0.68931 0.90605 0.89230 0.89617 0.95069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.72 11.31 21.45 0.24 -48.48 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -27.48 8.56 25.60 0.22 -27.27 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 9 C 0.04 1.98 2.07 -11.51 -0.02 1.95 16 10 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 11 C 0.11 3.75 6.42 86.36 0.55 4.30 16 12 N -0.58 -19.32 2.98 -821.64 -2.45 -21.77 16 13 C 0.51 17.00 7.10 87.18 0.62 17.62 16 14 O -0.53 -20.11 16.53 -3.31 -0.05 -20.16 16 15 C 0.38 11.00 4.98 28.15 0.14 11.14 16 16 O -0.36 -10.37 17.67 11.35 0.20 -10.17 16 17 C 0.47 12.02 8.38 70.76 0.59 12.61 16 18 O -0.48 -15.12 17.45 20.55 0.36 -14.76 16 19 O -0.48 -8.32 13.29 -49.88 -0.66 -8.98 16 20 C 0.11 3.63 6.33 86.22 0.55 4.18 16 21 C -0.12 -4.95 5.14 30.53 0.16 -4.79 16 22 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 23 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.09 2.92 7.03 -2.38 -0.02 2.90 16 28 H 0.45 2.88 9.11 -74.06 -0.67 2.20 16 29 H 0.08 2.24 6.30 -2.39 -0.02 2.22 16 30 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 31 H 0.09 4.08 6.03 -2.39 -0.01 4.07 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.05 283.03 3.57 -59.48 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.49 Total: 4.07 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 3.42 Total: 16.93 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -2.20 Total: -70.25 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.16 Total: -54.08 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -63.05 3.57 -59.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381031697.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.540 kcal (2) G-P(sol) polarization free energy of solvation -63.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds