Wall clock time and date at job start Mon Mar 30 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47028 * 270.00438 * 3 2 1 5 5 H 1.48491 * 109.47160 * 30.00753 * 3 2 1 6 6 H 1.48501 * 109.46632 * 150.00475 * 3 2 1 7 7 C 1.37872 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00470 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00042 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00140 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47412 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46950 * 65.00415 * 12 11 10 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.38421 * 122.54069 * 269.73676 * 16 15 14 18 18 C 1.33391 * 114.91982 * 179.75813 * 17 16 15 19 19 S 1.75881 * 109.59442 * 0.47793 * 18 17 16 20 20 C 1.33387 * 122.53849 * 90.02093 * 16 15 14 21 21 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47273 * 59.99500 * 9 7 2 23 23 H 1.09005 * 109.46758 * 299.99297 * 9 7 2 24 24 H 1.09004 * 109.46697 * 59.99791 * 11 10 9 25 25 H 1.09006 * 109.47202 * 300.00273 * 11 10 9 26 26 H 1.08995 * 109.47319 * 305.00344 * 12 11 10 27 27 H 1.09003 * 109.47435 * 184.99669 * 12 11 10 28 28 H 1.00908 * 110.99583 * 303.94989 * 13 12 11 29 29 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 30 30 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 31 31 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 32 32 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 33 33 H 1.07997 * 122.53936 * 0.02562 * 17 16 15 34 34 H 1.08001 * 125.20381 * 180.21019 * 18 17 16 35 35 H 1.08005 * 125.20560 * 0.02961 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6542 -0.0021 12 6 5.8070 -4.1324 -0.0012 13 7 5.3667 -4.7574 -1.2557 14 6 5.7288 -6.1807 -1.2901 15 6 5.2544 -6.7959 -2.6082 16 6 5.6263 -8.2558 -2.6438 17 6 6.8291 -8.7053 -3.1609 18 6 7.0031 -10.0269 -3.1119 19 16 5.5872 -10.7819 -2.3919 20 6 4.8192 -9.2132 -2.1845 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6803 0.8888 23 1 3.8745 -0.6801 -0.8912 24 1 5.8159 -2.1702 0.8874 25 1 5.8146 -2.1709 -0.8926 26 1 5.3318 -4.6348 0.8413 27 1 6.8899 -4.2194 0.0874 28 1 4.3747 -4.6336 -1.3926 29 1 6.8111 -6.2823 -1.2101 30 1 5.2527 -6.6970 -0.4565 31 1 4.1720 -6.6943 -2.6878 32 1 5.7300 -6.2797 -3.4421 33 1 7.5722 -8.0362 -3.5690 34 1 7.8777 -10.5532 -3.4647 35 1 3.8431 -9.0502 -1.7519 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395440802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:00 Heat of formation + Delta-G solvation = -22.255597 kcal Electronic energy + Delta-G solvation = -15715.736889 eV Core-core repulsion = 13033.214051 eV Total energy + Delta-G solvation = -2682.522838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71401 -37.33998 -35.58098 -32.70779 -31.74790 -29.45851 -28.03469 -26.72566 -23.75963 -21.96717 -21.87214 -21.44639 -18.86321 -17.74838 -16.86594 -16.15430 -15.77698 -15.19924 -15.11081 -14.56501 -14.10602 -13.85515 -13.30376 -13.18090 -13.07978 -12.60569 -12.44126 -12.20415 -12.02495 -11.61263 -11.53727 -11.13618 -10.92821 -10.87565 -10.70041 -10.48673 -9.87012 -9.19557 -8.99912 -8.85920 -8.56219 -8.47669 -8.26484 -6.12492 -4.11616 0.81347 1.47145 1.79213 2.50770 3.24956 3.31787 3.33342 4.29338 4.35155 4.68837 4.72803 4.95110 5.02935 5.19200 5.23733 5.28892 5.37640 5.46330 5.59640 5.63423 5.77339 5.87930 5.90632 6.01391 6.08336 6.21276 6.26575 6.38061 6.61263 6.99822 7.16148 7.57409 7.62037 8.00401 8.65413 8.97957 9.46885 11.00524 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.042986 B = 0.002968 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.218771 B = 9431.717520 C = 9816.253139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.171 3.829 10 O -0.385 6.385 11 C 0.057 3.943 12 C 0.066 3.934 13 N -0.690 5.690 14 C 0.066 3.934 15 C -0.061 4.061 16 C -0.095 4.095 17 C -0.127 4.127 18 C -0.215 4.215 19 S 0.081 5.919 20 C -0.209 4.209 21 H 0.266 0.734 22 H 0.002 0.998 23 H 0.000 1.000 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.356 0.644 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.129 -18.139 -4.878 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.063 4.063 13 N -0.323 5.323 14 C -0.064 4.064 15 C -0.101 4.101 16 C -0.108 4.108 17 C -0.158 4.158 18 C -0.350 4.350 19 S 0.344 5.656 20 C -0.344 4.344 21 H 0.076 0.924 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.176 0.824 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.976 -19.488 -4.889 25.059 hybrid contribution 0.338 2.186 0.336 2.237 sum 15.314 -17.302 -4.553 23.550 Atomic orbital electron populations 1.69879 1.06070 1.27109 1.50369 1.24773 0.94816 0.98807 0.94619 0.86833 0.80313 0.83694 0.78809 1.19877 1.20812 1.19113 1.20889 0.88306 0.95274 1.51235 0.90044 1.20578 0.96068 0.79429 0.94365 1.87841 1.17709 1.29741 1.95092 1.22390 0.84830 0.95217 0.99603 1.21920 0.99532 0.94130 0.90708 1.60488 1.23742 1.12583 1.35445 1.21876 1.00566 0.88252 0.95673 1.20313 1.01913 0.89113 0.98792 1.18972 0.94326 0.96794 1.00723 1.20158 0.98110 0.94993 1.02490 1.25583 1.02772 0.97946 1.08697 1.84260 1.11141 1.09858 1.60327 1.25535 1.04883 0.94733 1.09273 0.92361 0.98047 0.98255 0.93996 0.93361 0.94622 0.90606 0.82403 0.91315 0.95365 0.90718 0.89884 0.84120 0.81998 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.43 9.99 -34.44 -0.34 -15.77 16 8 H 0.08 2.64 8.06 -52.48 -0.42 2.21 16 9 C 0.17 4.35 4.76 36.01 0.17 4.52 16 10 O -0.38 -8.83 9.85 -35.23 -0.35 -9.17 16 11 C 0.06 1.01 6.28 37.16 0.23 1.24 16 12 C 0.07 0.97 6.11 -3.82 -0.02 0.95 16 13 N -0.69 -9.92 6.50 -113.78 -0.74 -10.66 16 14 C 0.07 0.78 5.67 -3.83 -0.02 0.76 16 15 C -0.06 -0.65 5.73 -27.89 -0.16 -0.81 16 16 C -0.10 -0.97 5.06 -106.25 -0.54 -1.51 16 17 C -0.13 -1.17 9.98 -41.21 -0.41 -1.58 16 18 C -0.21 -1.81 11.23 29.04 0.33 -1.48 16 19 S 0.08 0.71 23.34 -107.50 -2.51 -1.80 16 20 C -0.21 -2.07 10.98 29.04 0.32 -1.75 16 21 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 23 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.36 5.72 8.29 -39.29 -0.33 5.39 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.34 311.80 -8.67 -40.01 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.33 Total: 0.47 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.55 Total: -13.43 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.03 Total: -37.55 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.35 Total: -9.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.34 -8.67 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395440802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.751 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds