Wall clock time and date at job start Mon Mar 30 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47152 * 302.26351 * 3 2 1 5 5 C 1.37099 * 119.99865 * 96.51734 * 4 3 2 6 6 H 1.07994 * 119.99817 * 158.50699 * 5 4 3 7 7 C 1.38950 * 120.00116 * 338.50564 * 5 4 3 8 8 N 1.31414 * 119.99522 * 350.89689 * 7 5 4 9 9 Si 1.86797 * 120.00155 * 170.89545 * 7 5 4 10 10 H 1.48498 * 109.46898 * 90.00027 * 9 7 5 11 11 H 1.48503 * 109.47108 * 210.00031 * 9 7 5 12 12 H 1.48496 * 109.47330 * 329.99934 * 9 7 5 13 13 C 1.34777 * 120.00206 * 276.51003 * 4 3 2 14 14 O 1.21281 * 120.00232 * 186.77535 * 13 4 3 15 15 C 1.50708 * 119.99460 * 6.78352 * 13 4 3 16 16 H 1.08994 * 109.79193 * 24.61041 * 15 13 4 17 17 C 1.53251 * 109.62724 * 145.10562 * 15 13 4 18 18 N 1.46469 * 109.85937 * 181.70379 * 17 15 13 19 19 C 1.46465 * 112.55865 * 287.34393 * 18 17 15 20 20 C 1.53247 * 109.86180 * 72.65296 * 19 18 17 21 21 S 1.81893 * 108.50890 * 297.99715 * 20 19 18 22 22 H 1.09002 * 109.46611 * 182.26659 * 3 2 1 23 23 H 1.08999 * 109.47204 * 62.26641 * 3 2 1 24 24 H 0.97002 * 119.99665 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.40800 * 61.58647 * 17 15 13 26 26 H 1.09005 * 109.40521 * 301.82240 * 17 15 13 27 27 H 1.00896 * 110.99917 * 162.22763 * 18 17 15 28 28 H 1.08995 * 109.40654 * 192.77230 * 19 18 17 29 29 H 1.08996 * 109.40682 * 312.53410 * 19 18 17 30 30 H 1.09007 * 109.62953 * 57.70511 * 20 19 18 31 31 H 1.09003 * 109.63183 * 178.28972 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.7364 1.1680 5 6 3.4528 -2.0548 1.0467 6 1 4.1186 -2.5028 1.7693 7 6 2.9570 -2.8145 -0.0058 8 7 2.0125 -2.3280 -0.7793 9 14 3.6329 -4.5270 -0.3212 10 1 2.8385 -5.5213 0.4439 11 1 3.5459 -4.8342 -1.7715 12 1 5.0516 -4.5870 0.1132 13 6 3.1962 -0.1185 2.3616 14 8 3.7143 -0.6887 3.2983 15 6 2.6636 1.2809 2.5323 16 1 1.8834 1.4713 1.7953 17 6 2.0896 1.4447 3.9438 18 7 1.5338 2.7906 4.1018 19 6 2.5719 3.8192 4.2001 20 6 3.2229 4.0345 2.8296 21 16 4.0146 2.4796 2.3158 22 1 2.9707 1.0277 0.0406 23 1 2.9715 -0.4774 -0.9096 24 1 1.6661 -2.8585 -1.5139 25 1 2.8816 1.2916 4.6768 26 1 1.3030 0.7070 4.1027 27 1 0.9072 2.8326 4.8915 28 1 2.1249 4.7535 4.5395 29 1 3.3304 3.5011 4.9154 30 1 2.4611 4.3154 2.1024 31 1 3.9736 4.8217 2.9004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703805714.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:12 Heat of formation + Delta-G solvation = -7.749344 kcal Electronic energy + Delta-G solvation = -17128.667277 eV Core-core repulsion = 14343.233134 eV Total energy + Delta-G solvation = -2785.434143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84879 -38.21515 -37.59704 -36.23939 -33.90114 -32.56388 -30.29087 -29.21354 -26.92610 -24.73884 -22.45384 -21.11500 -19.80866 -18.68739 -18.24998 -17.82343 -17.00337 -16.50386 -15.96008 -15.81333 -15.62163 -14.94163 -14.82809 -14.29560 -14.17396 -14.09937 -13.71662 -13.39897 -13.36233 -13.14345 -12.94088 -12.75854 -12.42445 -12.20461 -12.08512 -11.94924 -11.18401 -10.83379 -10.50700 -9.98370 -9.67944 -8.73647 -8.41893 -6.07356 0.39069 1.40750 1.46447 1.49961 1.58027 1.79585 2.07580 2.20747 2.30615 2.75190 2.99926 3.23401 3.49464 3.61005 3.86083 3.95456 4.03864 4.31438 4.40227 4.49805 4.54982 4.71329 4.76074 4.90706 4.95353 5.41585 5.81190 5.94194 6.30457 6.34341 6.91897 7.01714 7.22538 7.77141 8.59641 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.007089 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825306 B = 3948.572312 C = 4250.084117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.258 3.742 3 C 0.223 3.777 4 N -0.443 5.443 5 C -0.336 4.336 6 H 0.087 0.913 7 C 0.005 3.995 8 N -0.897 5.897 9 Si 0.995 3.005 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.265 1.265 13 C 0.469 3.531 14 O -0.600 6.600 15 C -0.055 4.055 16 H 0.099 0.901 17 C 0.086 3.914 18 N -0.701 5.701 19 C 0.056 3.944 20 C -0.074 4.074 21 S -0.266 6.266 22 H 0.117 0.883 23 H 0.136 0.864 24 H 0.277 0.723 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.367 0.633 28 H 0.121 0.879 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 12.274 3.651 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.059 4.059 3 C 0.097 3.903 4 N -0.162 5.162 5 C -0.464 4.464 6 H 0.105 0.895 7 C -0.197 4.197 8 N -0.536 5.536 9 Si 0.819 3.181 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.190 1.190 13 C 0.256 3.744 14 O -0.485 6.485 15 C -0.188 4.188 16 H 0.117 0.883 17 C -0.045 4.045 18 N -0.335 5.335 19 C -0.074 4.074 20 C -0.222 4.222 21 S -0.040 6.040 22 H 0.134 0.866 23 H 0.153 0.847 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.188 0.812 28 H 0.139 0.861 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.494 11.861 2.908 12.303 hybrid contribution -0.449 -1.255 0.880 1.597 sum 1.045 10.606 3.787 11.310 Atomic orbital electron populations 1.80890 1.14285 1.12890 1.09964 1.29593 0.95627 0.89299 0.91394 1.19093 0.80456 0.97777 0.93018 1.43688 1.55743 1.10705 1.06110 1.19754 1.27839 0.85839 1.12934 0.89514 1.26021 0.94881 1.03163 0.95648 1.69826 1.25274 1.39546 1.18925 0.84886 0.78687 0.76764 0.77770 1.20959 1.19295 1.18974 1.19907 0.84036 0.87796 0.82617 1.90506 1.48642 1.68662 1.40685 1.23194 0.98930 0.93985 1.02658 0.88298 1.21590 0.98637 0.91445 0.92866 1.59396 1.21267 1.02724 1.50156 1.22175 0.93715 0.96428 0.95107 1.23772 1.03445 0.94715 1.00285 1.87197 1.22116 1.05803 1.88906 0.86587 0.84697 0.91228 0.93593 0.91165 0.81162 0.86084 0.93818 0.88483 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.76 18.54 20.01 0.37 -23.39 16 2 C 0.26 11.59 12.27 89.44 1.10 12.68 16 3 C 0.22 9.29 4.78 84.57 0.40 9.69 16 4 N -0.44 -21.49 2.60 -645.42 -1.68 -23.17 16 5 C -0.34 -17.70 9.36 84.04 0.79 -16.92 16 6 H 0.09 4.87 7.34 -2.91 -0.02 4.85 16 7 C 0.00 0.23 5.14 84.93 0.44 0.66 16 8 N -0.90 -44.42 9.00 21.66 0.19 -44.23 16 9 Si 1.00 40.33 29.56 68.60 2.03 42.35 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 12 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 13 C 0.47 22.24 6.57 87.66 0.58 22.81 16 14 O -0.60 -32.55 15.99 -3.03 -0.05 -32.60 16 15 C -0.06 -2.08 2.24 29.93 0.07 -2.01 16 16 H 0.10 3.74 5.71 -2.39 -0.01 3.73 16 17 C 0.09 2.87 5.31 86.47 0.46 3.33 16 18 N -0.70 -16.95 6.58 -515.05 -3.39 -20.34 16 19 C 0.06 1.06 6.39 86.47 0.55 1.62 16 20 C -0.07 -1.52 6.69 72.06 0.48 -1.04 16 21 S -0.27 -8.46 21.42 -56.49 -1.21 -9.67 16 22 H 0.12 4.04 6.85 -2.39 -0.02 4.02 16 23 H 0.14 5.75 6.29 -2.39 -0.02 5.73 16 24 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 25 H 0.05 1.64 7.69 -2.39 -0.02 1.62 16 26 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.37 6.99 8.89 -89.70 -0.80 6.20 16 28 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.04 0.90 7.91 -2.39 -0.02 0.88 16 30 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -64.90 275.33 1.50 -63.40 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.37 Total: 16.80 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 4.86 Total: 30.83 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.50 Total: -111.12 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.21 Total: -9.67 kcal Total: -64.90 1.50 -63.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703805714.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.655 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds