Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99615 * 2 1 4 4 H 1.48502 * 109.47088 * 269.99567 * 3 2 1 5 5 H 1.48495 * 109.47506 * 29.99852 * 3 2 1 6 6 H 1.48509 * 109.47274 * 149.99878 * 3 2 1 7 7 C 1.37878 * 120.00623 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99549 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46865 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99891 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99798 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46640 * 179.97438 * 13 11 10 15 15 C 1.46905 * 110.99964 * 179.97438 * 14 13 11 16 16 C 1.50689 * 109.47503 * 180.02562 * 15 14 13 17 17 C 1.37810 * 121.56072 * 94.99678 * 16 15 14 18 18 C 1.35139 * 114.76145 * 179.73170 * 17 16 15 19 19 S 1.72056 * 105.50405 * 0.25248 * 18 17 16 20 20 N 1.30093 * 121.56243 * 275.22829 * 16 15 14 21 21 H 0.96993 * 120.00195 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47059 * 60.00472 * 9 7 2 23 23 H 1.09000 * 109.47263 * 299.99858 * 9 7 2 24 24 H 0.96997 * 119.99905 * 359.97438 * 10 9 7 25 25 H 1.09001 * 109.47236 * 59.99982 * 13 11 10 26 26 H 1.09000 * 109.46819 * 299.99532 * 13 11 10 27 27 H 1.00899 * 111.00186 * 303.95463 * 14 13 11 28 28 H 1.09005 * 109.46676 * 59.99801 * 15 14 13 29 29 H 1.08998 * 109.46957 * 300.00703 * 15 14 13 30 30 H 1.08002 * 122.62113 * 0.02562 * 17 16 15 31 31 H 1.07999 * 127.24681 * 180.27022 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8213 0.0020 12 8 6.1132 -1.8994 0.0025 13 6 5.8275 -4.2421 0.0013 14 7 7.2965 -4.2420 0.0020 15 6 7.8231 -5.6134 0.0019 16 6 9.3294 -5.5732 0.0033 17 6 10.0521 -5.6566 1.1737 18 6 11.3935 -5.6125 1.0150 19 16 11.6513 -5.4547 -0.6788 20 7 10.0084 -5.4536 -1.1000 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6799 0.8912 23 1 3.8753 -0.6802 -0.8888 24 1 3.3697 -3.3124 0.0010 25 1 5.4649 -4.7553 -0.8895 26 1 5.4634 -4.7566 0.8906 27 1 7.6584 -3.7153 -0.7789 28 1 7.4739 -6.1365 -0.8884 29 1 7.4731 -6.1370 0.8915 30 1 9.5834 -5.7546 2.1417 31 1 12.1453 -5.6654 1.7885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705790552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = 6.434728 kcal Electronic energy + Delta-G solvation = -15580.314130 eV Core-core repulsion = 12795.495055 eV Total energy + Delta-G solvation = -2784.819075 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55825 -38.87797 -35.46728 -34.22353 -32.36145 -31.49834 -29.42285 -27.73899 -25.11400 -22.91464 -21.84827 -20.11903 -19.68784 -18.39599 -17.42230 -16.33589 -15.88418 -15.74776 -15.39379 -14.72027 -14.47005 -13.99008 -13.57819 -13.55989 -13.27097 -12.72780 -12.53176 -12.36732 -12.21348 -11.71898 -11.52534 -11.02381 -10.76143 -10.70819 -10.01010 -9.97106 -9.50187 -9.24362 -8.93793 -8.78148 -8.53901 -8.14375 -6.21920 -4.24250 0.46057 1.28653 1.57946 2.15449 3.22118 3.27616 3.33799 3.42787 3.73513 4.29233 4.33560 4.43193 4.75614 4.99173 5.06111 5.13458 5.26262 5.27702 5.39067 5.42931 5.50191 5.65333 6.41982 6.64822 6.84113 7.07332 7.19600 7.22809 7.39191 8.13430 8.51068 8.74792 8.93666 9.38368 10.90020 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.053726 B = 0.003241 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.034087 B = 8637.874421 C = 8909.476251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.545 6.545 13 C 0.041 3.959 14 N -0.667 5.667 15 C 0.129 3.871 16 C 0.124 3.876 17 C -0.180 4.180 18 C -0.208 4.208 19 S 0.247 5.753 20 N -0.455 5.455 21 H 0.268 0.732 22 H 0.026 0.974 23 H 0.020 0.980 24 H 0.396 0.604 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.356 0.644 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.836 -14.776 1.716 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.423 6.423 13 C -0.091 4.091 14 N -0.301 5.301 15 C -0.005 4.005 16 C -0.055 4.055 17 C -0.215 4.215 18 C -0.356 4.356 19 S 0.400 5.600 20 N -0.277 5.277 21 H 0.078 0.922 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.230 0.770 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.176 0.824 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.177 0.823 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 21.160 -13.690 0.363 25.205 hybrid contribution -1.024 0.131 0.858 1.342 sum 20.136 -13.560 1.221 24.307 Atomic orbital electron populations 1.69875 1.06225 1.27452 1.49456 1.24798 0.94790 0.99201 0.93847 0.86814 0.80602 0.83207 0.79057 1.19863 1.20886 1.18464 1.21096 0.88533 0.95224 1.53321 0.90241 1.19483 0.95189 0.78646 0.96780 1.46154 1.05592 1.11069 1.72782 1.20352 0.83202 0.90550 0.77614 1.90668 1.55461 1.46020 1.50173 1.21839 0.88523 0.95899 1.02881 1.60123 1.06247 1.11665 1.52040 1.20621 0.85944 0.91331 1.02623 1.21431 0.98359 0.97167 0.88528 1.21260 0.92686 1.06758 1.00791 1.26598 1.00327 1.05233 1.03415 1.84065 1.10998 1.66794 0.98129 1.76685 1.00462 1.23804 1.26766 0.92249 0.95661 0.96226 0.77021 0.92210 0.87982 0.82378 0.92907 0.88485 0.82300 0.79897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.89 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.45 4.50 -5.19 -0.02 5.42 16 10 N -0.71 -14.04 5.55 -61.47 -0.34 -14.38 16 11 C 0.50 9.32 7.87 -10.99 -0.09 9.23 16 12 O -0.55 -12.49 16.20 5.56 0.09 -12.40 16 13 C 0.04 0.53 6.17 -4.98 -0.03 0.50 16 14 N -0.67 -8.79 6.11 -116.34 -0.71 -9.50 16 15 C 0.13 1.29 6.08 -4.98 -0.03 1.25 16 16 C 0.12 1.35 6.23 -83.49 -0.52 0.83 16 17 C -0.18 -1.63 9.95 -40.84 -0.41 -2.04 16 18 C -0.21 -1.63 11.42 29.63 0.34 -1.29 16 19 S 0.25 2.32 23.72 -107.50 -2.55 -0.22 16 20 N -0.46 -5.57 12.05 32.03 0.39 -5.19 16 21 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 24 H 0.40 6.79 8.32 -40.82 -0.34 6.45 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.36 5.29 8.42 -39.29 -0.33 4.96 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 289.62 15.07 4.36 4.36 Total: -1.00 -33.47 289.62 -7.40 -40.87 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.55 Total: 4.56 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.19 Total: 0.77 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.11 Total: -54.81 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.55 Total: -0.22 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.47 -7.40 -40.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705790552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds