Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99742 * 2 1 4 4 H 1.48505 * 109.46990 * 269.99820 * 3 2 1 5 5 H 1.48497 * 109.47509 * 29.99697 * 3 2 1 6 6 H 1.48500 * 109.46958 * 150.00239 * 3 2 1 7 7 C 1.38950 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00229 * 359.97438 * 7 2 1 9 9 N 1.37095 * 119.99640 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00017 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99634 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00421 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47299 * 180.02562 * 12 10 9 14 14 N 1.40141 * 126.53392 * 270.02318 * 13 12 10 15 15 N 1.28657 * 108.93692 * 179.70413 * 14 13 12 16 16 C 1.34680 * 109.74036 * 0.44287 * 15 14 13 17 17 C 1.46622 * 125.99546 * 179.81280 * 16 15 14 18 18 O 1.21615 * 119.99827 * 179.69666 * 17 16 15 19 19 O 1.34859 * 120.00421 * 359.69828 * 17 16 15 20 20 C 1.35376 * 126.54335 * 89.99766 * 13 12 10 21 21 N 1.37910 * 126.79902 * 359.97438 * 20 13 12 22 22 H 0.96996 * 119.99957 * 0.02562 * 1 2 3 23 23 H 0.97002 * 120.00662 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47144 * 59.99475 * 12 10 9 25 25 H 1.08998 * 109.46683 * 299.99610 * 12 10 9 26 26 H 0.96700 * 117.00381 * 180.02562 * 19 17 16 27 27 H 0.97000 * 119.99174 * 180.02562 * 21 20 13 28 28 H 0.96993 * 120.00093 * 359.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5608 -2.3704 0.0022 13 7 6.0492 -3.7516 0.0014 14 7 6.3260 -4.5393 1.1269 15 7 6.7293 -5.6972 0.7373 16 6 6.7528 -5.7416 -0.6086 17 6 7.1592 -6.8889 -1.4261 18 8 7.1331 -6.8107 -2.6394 19 8 7.5619 -8.0310 -0.8325 20 6 6.3187 -4.5106 -1.0867 21 7 6.1874 -4.1369 -2.4077 22 1 -0.4850 0.8400 -0.0004 23 1 3.8649 -0.3632 0.0007 24 1 5.9235 -1.8569 0.8927 25 1 5.9248 -1.8563 -0.8873 26 1 7.8205 -8.7599 -1.4129 27 1 6.4096 -4.7642 -3.1134 28 1 5.8722 -3.2472 -2.6310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713452674.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -23.996274 kcal Electronic energy + Delta-G solvation = -18355.893075 eV Core-core repulsion = 15023.461198 eV Total energy + Delta-G solvation = -3332.431877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.95801 -39.73285 -38.62509 -36.23160 -35.40974 -34.37057 -33.50497 -31.93957 -29.51081 -28.55939 -24.92816 -24.18485 -22.07962 -21.04550 -19.87304 -18.92260 -18.00677 -17.58342 -17.01395 -16.72254 -16.61837 -15.78749 -15.18487 -14.67229 -14.60259 -14.52617 -13.56853 -13.42262 -12.92729 -12.41501 -12.36744 -11.93625 -11.79353 -11.56639 -11.37485 -11.05930 -10.79215 -10.76790 -10.24552 -10.03020 -9.83902 -8.80211 -8.44960 -8.17564 -6.52562 -4.06362 1.39480 1.70449 1.96692 2.85249 2.89621 3.01347 3.09546 3.19374 3.30161 3.44296 3.90345 4.21451 4.42033 4.54685 5.01848 5.04229 5.07377 5.42996 5.57626 5.85897 6.15917 6.41760 6.97418 7.29231 7.30564 7.84875 7.88332 8.28994 8.30297 8.69086 9.13803 9.45956 10.59352 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.004719 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.868415 B = 5932.415780 C = 5977.975881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.046 3.954 3 Si 0.881 3.119 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.572 5.572 10 C 0.421 3.579 11 O -0.558 6.558 12 C 0.110 3.890 13 N -0.375 5.375 14 N -0.052 5.052 15 N -0.159 5.159 16 C -0.181 4.181 17 C 0.589 3.411 18 O -0.540 6.540 19 O -0.498 6.498 20 C 0.430 3.570 21 N -0.812 5.812 22 H 0.277 0.723 23 H 0.373 0.627 24 H 0.127 0.873 25 H 0.109 0.891 26 H 0.411 0.589 27 H 0.432 0.568 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.487 -3.162 -4.742 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.159 4.159 3 Si 0.707 3.293 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.211 5.211 10 C 0.205 3.795 11 O -0.440 6.440 12 C -0.016 4.016 13 N -0.166 5.166 14 N -0.034 5.034 15 N -0.037 5.037 16 C -0.321 4.321 17 C 0.434 3.566 18 O -0.430 6.430 19 O -0.307 6.307 20 C 0.187 3.813 21 N -0.363 5.363 22 H 0.088 0.912 23 H 0.206 0.794 24 H 0.145 0.855 25 H 0.127 0.873 26 H 0.268 0.732 27 H 0.268 0.732 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 14.742 -3.459 -3.268 15.491 hybrid contribution 0.403 1.359 -1.776 2.272 sum 15.145 -2.099 -5.044 16.100 Atomic orbital electron populations 1.69615 1.05753 1.27989 1.47383 1.25086 0.95546 0.98193 0.97028 0.86656 0.79874 0.83762 0.79029 1.19394 1.19821 1.19303 1.19433 0.78698 0.96896 1.48943 0.86076 1.42101 1.07771 1.05703 1.65486 1.19658 0.87595 0.85402 0.86881 1.90674 1.68522 1.30679 1.54081 1.21678 0.96045 0.77606 1.06230 1.49427 1.50283 1.13084 1.03768 1.81961 1.21103 0.96395 1.03956 1.74557 1.07886 1.11923 1.09297 1.19196 1.28444 0.93809 0.90614 1.18772 0.72254 0.81002 0.84524 1.90825 1.54096 1.83369 1.14693 1.84675 1.77915 1.23657 1.44477 1.18253 0.90379 0.89612 0.83046 1.41684 1.73008 1.19906 1.01691 0.91199 0.79373 0.85540 0.87276 0.73152 0.73183 0.76139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 13.96 55.50 0.77 -23.28 15 2 C 0.05 1.19 5.50 -17.47 -0.10 1.09 15 3 Si 0.88 17.64 27.74 -169.99 -4.71 12.93 15 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.27 -4.76 6.52 56.52 0.37 -4.39 15 7 C -0.31 -8.21 10.16 -14.93 -0.15 -8.37 15 8 H 0.12 3.74 7.39 -52.49 -0.39 3.36 15 9 N -0.57 -12.16 5.09 -10.96 -0.06 -12.22 15 10 C 0.42 8.64 7.85 -10.98 -0.09 8.55 15 11 O -0.56 -14.42 16.01 5.54 0.09 -14.34 15 12 C 0.11 1.57 6.79 -5.19 -0.04 1.53 15 13 N -0.37 -6.17 3.13 -61.19 -0.19 -6.36 15 14 N -0.05 -0.97 13.74 60.35 0.83 -0.14 15 15 N -0.16 -2.91 12.38 33.14 0.41 -2.50 15 16 C -0.18 -3.00 7.08 -82.95 -0.59 -3.58 15 17 C 0.59 8.51 8.31 34.11 0.28 8.80 15 18 O -0.54 -7.90 15.88 -19.36 -0.31 -8.21 15 19 O -0.50 -5.84 13.44 -40.93 -0.55 -6.39 15 20 C 0.43 6.64 8.05 -153.51 -1.24 5.41 15 21 N -0.81 -9.53 9.02 31.42 0.28 -9.25 15 22 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.37 6.63 5.76 -40.82 -0.24 6.39 15 24 H 0.13 1.48 8.14 -51.93 -0.42 1.06 15 25 H 0.11 1.04 7.59 -51.93 -0.39 0.65 15 26 H 0.41 2.45 9.11 45.56 0.42 2.86 15 27 H 0.43 4.75 6.98 -40.82 -0.28 4.47 15 28 H 0.41 3.89 8.20 -40.82 -0.33 3.55 15 LS Contribution 266.33 15.07 4.01 4.01 Total: -1.00 -35.50 266.33 -2.14 -37.64 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.81 Total: 14.66 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -1.91 Total: 13.43 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 2.05 Total: -53.75 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.77 Total: -28.93 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.71 Total: 12.93 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.50 -2.14 -37.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713452674.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.644 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds