Wall clock time and date at job start Mon Mar 30 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 102.99942 * 2 1 4 4 C 1.53004 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21303 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47298 * 300.00058 * 1 2 3 23 23 H 1.08996 * 109.46985 * 60.00272 * 1 2 3 24 24 H 1.08995 * 109.47437 * 60.00277 * 3 2 1 25 25 H 1.08998 * 109.47536 * 299.99818 * 3 2 1 26 26 H 1.09009 * 109.46730 * 59.99806 * 4 3 2 27 27 H 1.08998 * 109.46846 * 300.00350 * 4 3 2 28 28 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 29 29 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 30 30 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 31 31 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0814 3.4083 0.0000 6 8 3.1942 4.2356 -0.0013 7 7 5.3703 3.8023 -0.0053 8 6 5.6865 5.1722 -0.0116 9 6 4.7653 6.2350 -0.0195 10 7 5.4335 7.3607 -0.0211 11 7 6.8021 7.0626 -0.0233 12 6 7.8283 7.9750 -0.0305 13 1 8.8533 7.6349 -0.0320 14 6 7.5478 9.3363 -0.0360 15 7 6.3017 9.7498 -0.0336 16 14 8.9437 10.5775 -0.0451 17 1 9.7757 10.3779 -1.2589 18 1 8.3833 11.9527 -0.0493 19 1 9.7820 10.3887 1.1660 20 6 6.9347 5.7041 -0.0168 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8032 2.2371 0.8899 25 1 1.8032 2.2371 -0.8900 26 1 4.1616 1.4702 -0.8892 27 1 4.1609 1.4704 0.8908 28 1 6.0797 3.1408 -0.0045 29 1 3.6896 6.1387 -0.0214 30 1 6.1059 10.6998 -0.0371 31 1 7.8635 5.1532 -0.0157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747436153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:58 Heat of formation + Delta-G solvation = 40.163574 kcal Electronic energy + Delta-G solvation = -15907.477210 eV Core-core repulsion = 13124.120727 eV Total energy + Delta-G solvation = -2783.356483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92756 -38.64464 -34.26010 -33.20297 -32.74818 -30.22111 -29.17800 -27.87005 -25.29399 -24.02055 -21.00273 -20.10393 -19.41031 -17.61231 -16.69708 -16.03870 -15.72365 -15.43745 -15.17663 -14.22845 -14.09006 -13.93832 -13.56734 -13.47163 -12.93664 -12.90953 -12.48819 -11.98431 -11.64704 -11.45773 -11.42031 -11.22845 -10.96150 -10.56039 -10.18391 -10.16008 -9.20478 -9.16159 -8.80578 -8.06007 -7.87127 -6.70174 -6.55459 -4.22746 1.46939 2.39977 2.82135 3.04050 3.04774 3.08858 3.65304 3.67762 3.90575 4.41697 4.68209 4.77343 4.90159 4.93084 4.93833 5.02424 5.22677 5.46703 5.52261 5.65428 5.82626 6.24583 6.45878 6.90178 6.95565 7.12099 7.24358 7.85836 8.17270 8.28694 8.62981 8.84888 9.38035 9.67128 10.40540 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.088374 B = 0.003450 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.759188 B = 8115.120977 C = 8406.110583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.276 6.276 3 C -0.063 4.063 4 C -0.120 4.120 5 C 0.502 3.498 6 O -0.539 6.539 7 N -0.623 5.623 8 C -0.061 4.061 9 C -0.034 4.034 10 N -0.261 5.261 11 N -0.143 5.143 12 C -0.324 4.324 13 H 0.116 0.884 14 C 0.046 3.954 15 N -0.771 5.771 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.084 4.084 21 H 0.099 0.901 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.398 0.602 29 H 0.176 0.824 30 H 0.275 0.725 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -14.670 0.039 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.050 6.050 3 C -0.212 4.212 4 C -0.162 4.162 5 C 0.287 3.713 6 O -0.416 6.416 7 N -0.265 5.265 8 C -0.167 4.167 9 C -0.209 4.209 10 N -0.092 5.092 11 N 0.090 4.910 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.235 4.235 21 H 0.118 0.882 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.231 0.769 29 H 0.192 0.808 30 H 0.086 0.914 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.116 -13.463 0.036 14.078 hybrid contribution 0.287 0.225 0.002 0.364 sum -3.829 -13.238 0.038 13.781 Atomic orbital electron populations 1.23347 0.93786 1.06300 1.05191 1.86694 1.07909 1.12219 1.98182 1.23093 0.98583 0.92751 1.06733 1.21290 0.95072 0.94591 1.05219 1.20187 0.82622 0.90187 0.78340 1.90601 1.46896 1.53984 1.50143 1.42499 1.06869 1.05935 1.71224 1.17289 0.93104 0.82531 1.23750 1.24104 0.99977 0.88808 1.08035 1.78251 0.85468 1.19755 1.25729 1.44546 1.05070 1.02281 1.39143 1.19824 0.86072 0.86146 1.53556 0.86662 1.25642 0.97682 0.98296 0.95492 1.70209 1.17905 1.16314 1.35278 0.85893 0.79904 0.78861 0.79468 1.19156 1.20138 1.19163 1.21269 0.96481 0.85757 1.19981 0.88200 0.90369 0.90374 0.89103 0.89097 0.88323 0.88326 0.76907 0.80764 0.91414 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.76 101.05 1.09 0.16 16 2 S -0.28 -2.91 22.38 -107.50 -2.41 -5.32 16 3 C -0.06 -0.74 5.23 37.16 0.19 -0.55 16 4 C -0.12 -1.40 5.71 -27.88 -0.16 -1.56 16 5 C 0.50 8.44 7.80 -10.98 -0.09 8.36 16 6 O -0.54 -11.22 13.13 5.54 0.07 -11.14 16 7 N -0.62 -10.86 5.47 -10.00 -0.05 -10.91 16 8 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 9 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 10 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 11 N -0.14 -3.94 3.74 -11.41 -0.04 -3.99 16 12 C -0.32 -8.60 10.25 -14.82 -0.15 -8.75 16 13 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.64 11.81 55.49 0.66 -20.99 16 16 Si 0.93 18.95 29.55 -169.99 -5.02 13.92 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 20 C -0.08 -1.98 11.49 -16.39 -0.19 -2.17 16 21 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 25 H 0.09 1.13 8.10 -51.92 -0.42 0.71 16 26 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.40 5.25 8.83 -40.82 -0.36 4.89 16 29 H 0.18 4.57 5.92 -52.49 -0.31 4.26 16 30 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -33.14 288.13 -5.89 -39.04 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -3.59 Total: 8.85 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.16 Total: -6.48 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.88 Total: -43.21 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.41 Total: -5.32 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.14 -5.89 -39.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747436153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.202 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds