Wall clock time and date at job start Mon Mar 30 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 102.99942 * 2 1 4 4 C 1.53004 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21303 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47298 * 300.00058 * 1 2 3 23 23 H 1.08996 * 109.46985 * 60.00272 * 1 2 3 24 24 H 1.08995 * 109.47437 * 60.00277 * 3 2 1 25 25 H 1.08998 * 109.47536 * 299.99818 * 3 2 1 26 26 H 1.09009 * 109.46730 * 59.99806 * 4 3 2 27 27 H 1.08998 * 109.46846 * 300.00350 * 4 3 2 28 28 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 29 29 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 30 30 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 31 31 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0814 3.4083 0.0000 6 8 3.1942 4.2356 -0.0013 7 7 5.3703 3.8023 -0.0053 8 6 5.6865 5.1722 -0.0116 9 6 4.7653 6.2350 -0.0195 10 7 5.4335 7.3607 -0.0211 11 7 6.8021 7.0626 -0.0233 12 6 7.8283 7.9750 -0.0305 13 1 8.8533 7.6349 -0.0320 14 6 7.5478 9.3363 -0.0360 15 7 6.3017 9.7498 -0.0336 16 14 8.9437 10.5775 -0.0451 17 1 9.7757 10.3779 -1.2589 18 1 8.3833 11.9527 -0.0493 19 1 9.7820 10.3887 1.1660 20 6 6.9347 5.7041 -0.0168 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8032 2.2371 0.8899 25 1 1.8032 2.2371 -0.8900 26 1 4.1616 1.4702 -0.8892 27 1 4.1609 1.4704 0.8908 28 1 6.0797 3.1408 -0.0045 29 1 3.6896 6.1387 -0.0214 30 1 6.1059 10.6998 -0.0371 31 1 7.8635 5.1532 -0.0157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747436153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:58 Heat of formation + Delta-G solvation = 17.332547 kcal Electronic energy + Delta-G solvation = -15908.467238 eV Core-core repulsion = 13124.120727 eV Total energy + Delta-G solvation = -2784.346511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70179 -40.26010 -35.95387 -34.95779 -33.88844 -32.20302 -29.88919 -29.60281 -27.03581 -25.38749 -22.84990 -21.66145 -21.16344 -19.35914 -18.04135 -17.41939 -17.12963 -16.85269 -16.61948 -15.80254 -15.48277 -15.14008 -14.83684 -14.81797 -14.45000 -14.05082 -13.53753 -13.48155 -13.27088 -12.87240 -12.86204 -12.79436 -12.37601 -12.13617 -11.81786 -11.00684 -10.99401 -10.83989 -10.66383 -10.10003 -8.68587 -8.52101 -8.46532 -6.23955 0.64371 1.23194 1.40082 1.54307 1.56547 1.61365 1.87675 2.08795 2.38663 2.53073 2.95050 3.09438 3.69565 3.95962 4.04931 4.33297 4.36789 4.44823 4.55108 4.62967 4.73694 4.89125 4.90396 5.00568 5.10183 5.30196 5.49644 5.96296 6.32328 6.74414 6.77220 7.40841 7.47933 7.68980 8.52788 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.088374 B = 0.003450 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.759188 B = 8115.120977 C = 8406.110583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.283 6.283 3 C -0.063 4.063 4 C -0.104 4.104 5 C 0.501 3.499 6 O -0.581 6.581 7 N -0.616 5.616 8 C -0.046 4.046 9 C -0.062 4.062 10 N -0.312 5.312 11 N -0.169 5.169 12 C -0.355 4.355 13 H 0.141 0.859 14 C -0.007 4.007 15 N -0.826 5.826 16 Si 1.020 2.980 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.253 1.253 20 C -0.081 4.081 21 H 0.118 0.882 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.422 0.578 29 H 0.167 0.833 30 H 0.276 0.724 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -16.760 0.042 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.058 6.058 3 C -0.211 4.211 4 C -0.145 4.145 5 C 0.288 3.712 6 O -0.461 6.461 7 N -0.261 5.261 8 C -0.152 4.152 9 C -0.237 4.237 10 N -0.144 5.144 11 N 0.062 4.938 12 C -0.486 4.486 13 H 0.159 0.841 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.839 3.161 17 H -0.177 1.177 18 H -0.204 1.204 19 H -0.177 1.177 20 C -0.231 4.231 21 H 0.136 0.864 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.259 0.741 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.524 -15.629 0.039 15.831 hybrid contribution -0.332 0.675 0.002 0.753 sum -2.856 -14.953 0.041 15.224 Atomic orbital electron populations 1.23461 0.91485 1.07662 1.05705 1.86664 1.10524 1.10415 1.98190 1.22991 0.98639 0.93897 1.05622 1.21266 0.95203 0.90333 1.07655 1.21193 0.81653 0.92181 0.76189 1.90594 1.48141 1.55843 1.51541 1.42478 1.08230 1.04035 1.71351 1.17375 0.92110 0.84618 1.21080 1.24172 1.00142 0.89904 1.09464 1.78141 0.87129 1.21610 1.27502 1.44847 1.04577 1.03903 1.40520 1.20588 0.87014 0.86891 1.54125 0.84131 1.26895 1.00495 1.00367 0.94133 1.70399 1.20849 1.16741 1.37417 0.84644 0.76035 0.75178 0.80288 1.17688 1.20357 1.17704 1.22030 0.98286 0.84792 1.18016 0.86366 0.89900 0.89910 0.90294 0.90301 0.85722 0.85712 0.74072 0.81589 0.91425 0.79411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.76 113.37 1.22 -0.34 16 2 S -0.28 -5.36 22.38 -56.49 -1.26 -6.62 16 3 C -0.06 -1.39 5.23 71.98 0.38 -1.01 16 4 C -0.10 -2.14 5.71 29.85 0.17 -1.97 16 5 C 0.50 16.22 7.80 87.66 0.68 16.90 16 6 O -0.58 -24.54 13.13 -3.10 -0.04 -24.58 16 7 N -0.62 -20.29 5.47 -303.92 -1.66 -21.95 16 8 C -0.05 -2.08 6.90 37.73 0.26 -1.82 16 9 C -0.06 -3.38 10.85 85.42 0.93 -2.46 16 10 N -0.31 -19.00 10.40 -56.47 -0.59 -19.59 16 11 N -0.17 -9.47 3.74 -190.02 -0.71 -10.18 16 12 C -0.36 -18.89 10.25 84.01 0.86 -18.03 16 13 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 14 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 15 N -0.83 -48.13 11.81 21.66 0.26 -47.87 16 16 Si 1.02 38.67 29.55 68.60 2.03 40.70 16 17 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 18 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 20 C -0.08 -3.73 11.49 83.37 0.96 -2.78 16 21 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 25 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 26 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.42 9.72 8.83 -92.71 -0.82 8.90 16 29 H 0.17 9.21 5.92 -2.91 -0.02 9.19 16 30 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.19 6.75 8.06 -2.91 -0.02 6.73 16 Total: -1.00 -75.70 288.13 4.28 -71.43 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.33 Total: 30.10 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.92 Total: -11.43 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.70 Total: -99.59 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.04 Total: -24.58 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.26 Total: -6.62 kcal Total: -75.70 4.28 -71.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747436153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.761 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds