Wall clock time and date at job start Mon Mar 30 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99753 * 2 1 4 4 C 1.50704 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.29915 * 125.36841 * 90.00514 * 4 3 2 6 6 C 1.36099 * 108.47429 * 179.97438 * 5 4 3 7 7 C 1.47277 * 126.46124 * 180.02562 * 6 5 4 8 8 O 1.21533 * 120.00045 * 179.97438 * 7 6 5 9 9 O 1.34777 * 119.99682 * 359.95345 * 7 6 5 10 10 C 1.45202 * 116.99500 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46898 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47226 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99889 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00166 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99868 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00182 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47201 * 89.99877 * 16 14 12 18 18 H 1.48505 * 109.47446 * 209.99722 * 16 14 12 19 19 H 1.48496 * 109.47127 * 330.00303 * 16 14 12 20 20 C 1.36175 * 107.08231 * 359.97438 * 6 5 4 21 21 O 1.34058 * 125.36561 * 269.97192 * 4 3 2 22 22 H 1.09004 * 109.47014 * 60.00418 * 1 2 3 23 23 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47233 * 300.00113 * 1 2 3 25 25 H 1.09004 * 109.46804 * 59.99930 * 3 2 1 26 26 H 1.08999 * 109.47386 * 299.99656 * 3 2 1 27 27 H 1.09002 * 109.47170 * 299.99993 * 10 9 7 28 28 H 1.09005 * 109.47429 * 60.00221 * 10 9 7 29 29 H 1.09000 * 109.46705 * 300.00096 * 11 10 9 30 30 H 1.08997 * 109.47052 * 59.99616 * 11 10 9 31 31 H 0.96996 * 119.99746 * 179.97438 * 15 14 12 32 32 H 1.08003 * 126.52996 * 179.73955 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2626 1.1270 -1.0584 6 6 5.5607 1.0247 -0.6624 7 6 6.7391 0.9321 -1.5409 8 8 7.8513 0.8449 -1.0586 9 8 6.5841 0.9435 -2.8797 10 6 7.7895 0.8481 -3.6836 11 6 7.4165 0.8760 -5.1672 12 6 8.6675 0.7777 -6.0017 13 1 9.6322 0.7032 -5.5218 14 6 8.5806 0.7838 -7.3776 15 7 7.4059 0.8749 -7.9620 16 14 10.1314 0.6627 -8.4119 17 1 10.4338 -0.7653 -8.6854 18 1 9.9273 1.3801 -9.6961 19 1 11.2660 1.2768 -7.6767 20 6 5.5647 1.0255 0.6994 21 8 4.2856 1.1259 1.0942 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 8.4445 1.6895 -3.4574 28 1 8.3049 -0.0851 -3.4564 29 1 6.7616 0.0344 -5.3930 30 1 6.9007 1.8089 -5.3948 31 1 7.3449 0.8796 -8.9300 32 1 6.4314 0.9535 1.3398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774285411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:10 Heat of formation + Delta-G solvation = -136.163406 kcal Electronic energy + Delta-G solvation = -17811.240327 eV Core-core repulsion = 14545.192110 eV Total energy + Delta-G solvation = -3266.048217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.68741 -41.34482 -38.92849 -37.82129 -36.18126 -35.45231 -32.78574 -32.25810 -28.94899 -27.48394 -26.66751 -25.64759 -23.21366 -22.71251 -21.89749 -19.65623 -18.65060 -18.41200 -18.00428 -17.56502 -17.39628 -16.93749 -16.67799 -16.63439 -16.44459 -15.13903 -15.04588 -14.58724 -14.36729 -13.90418 -13.30978 -13.24440 -13.07137 -12.74183 -12.63247 -12.59900 -12.34434 -12.15950 -11.98058 -11.63827 -11.54287 -11.43925 -10.79706 -10.62809 -10.39923 -8.27473 -6.41804 -0.25011 0.52628 1.25371 1.40575 1.43619 1.51975 1.57599 1.79890 2.38383 2.53366 3.06640 3.16174 3.53874 3.58675 4.05142 4.16765 4.18316 4.20847 4.32088 4.49527 4.54194 4.62753 4.63690 4.73790 4.92503 5.15079 5.41537 5.42281 5.70290 6.01627 6.03147 6.20945 6.58921 6.72019 7.28150 8.85556 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.003686 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.957894 B = 7594.395526 C = 8425.535650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.160 3.840 4 C 0.198 3.802 5 N -0.463 5.463 6 C -0.097 4.097 7 C 0.547 3.453 8 O -0.522 6.522 9 O -0.354 6.354 10 C 0.089 3.911 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.069 0.931 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.978 3.022 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.261 1.261 20 C 0.075 3.925 21 O -0.178 6.178 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.002 0.998 30 H 0.004 0.996 31 H 0.268 0.732 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 1.533 20.771 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.083 3.917 4 C -0.013 4.013 5 N -0.194 5.194 6 C -0.214 4.214 7 C 0.392 3.608 8 O -0.413 6.413 9 O -0.269 6.269 10 C 0.016 3.984 11 C -0.007 4.007 12 C -0.587 4.587 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.802 3.198 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.185 1.185 20 C 0.000 4.000 21 O -0.063 6.063 22 H 0.075 0.925 23 H 0.115 0.885 24 H 0.088 0.912 25 H 0.141 0.859 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -12.326 1.364 20.086 23.606 hybrid contribution 0.882 0.012 -0.376 0.959 sum -11.444 1.376 19.710 22.833 Atomic orbital electron populations 1.23048 0.77260 1.04464 1.02053 1.87908 1.23068 1.26727 1.95932 1.20885 0.78080 0.86583 1.06157 1.26509 0.96840 1.00285 0.77635 1.70855 1.01361 1.15798 1.31393 1.20703 0.90541 1.17317 0.92887 1.19817 0.87004 0.72308 0.81693 1.90826 1.25935 1.47803 1.76703 1.86679 1.40085 1.82318 1.17848 1.23323 0.83144 1.01495 0.90425 1.18986 0.97196 0.96510 0.87978 1.21364 0.93132 1.52271 0.91978 0.91272 1.26037 1.00176 0.94014 0.99297 1.70121 1.25822 1.50153 1.10650 0.85251 0.78414 0.78657 0.77526 1.19492 1.20388 1.18484 1.26072 0.86017 0.94074 0.93812 1.84459 1.16579 1.67998 1.37283 0.92507 0.88521 0.91172 0.85855 0.87345 0.91360 0.91515 0.97915 0.97769 0.92314 0.70573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.87 10.69 -148.98 -1.59 -9.46 16 3 C 0.16 2.45 6.56 71.24 0.47 2.92 16 4 C 0.20 4.72 7.93 88.39 0.70 5.42 16 5 N -0.46 -15.23 11.36 -293.09 -3.33 -18.55 16 6 C -0.10 -3.11 7.04 40.38 0.28 -2.83 16 7 C 0.55 21.40 7.96 70.20 0.56 21.96 16 8 O -0.52 -20.69 16.68 19.73 0.33 -20.36 16 9 O -0.35 -16.27 10.23 -56.88 -0.58 -16.85 16 10 C 0.09 4.25 5.42 71.98 0.39 4.64 16 11 C 0.03 1.73 5.35 29.85 0.16 1.89 16 12 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 13 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 16 Si 0.98 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.07 1.58 11.95 67.34 0.80 2.39 16 21 O -0.18 -3.64 10.72 0.53 0.01 -3.63 16 22 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 23 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.07 3.07 8.14 -2.38 -0.02 3.06 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.28 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -77.34 298.99 3.58 -73.76 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: 1.13 Total: -1.15 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.31 Total: 6.76 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.04 Total: -75.48 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.84 Total: -50.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -77.34 3.58 -73.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774285411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.406 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds