Wall clock time and date at job start Mon Mar 30 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36884 * 126.39922 * 2 1 4 4 Cl 1.73592 * 126.59972 * 0.02562 * 3 2 1 5 5 C 1.34801 * 106.79947 * 179.88063 * 3 2 1 6 6 N 1.34169 * 108.01470 * 0.38727 * 5 3 2 7 7 C 1.30470 * 109.26994 * 359.75366 * 6 5 3 8 8 C 1.50702 * 125.64600 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47525 * 270.04568 * 8 7 6 10 10 C 1.47477 * 110.99905 * 265.97193 * 9 8 7 11 11 C 1.53516 * 87.92732 * 221.29582 * 10 9 8 12 12 C 1.50697 * 114.34133 * 139.68604 * 11 10 9 13 13 H 1.08006 * 120.00137 * 266.07181 * 12 11 10 14 14 C 1.37877 * 120.00376 * 86.07559 * 12 11 10 15 15 N 1.31515 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00332 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46922 * 89.99603 * 16 14 12 18 18 H 1.48494 * 109.47156 * 209.99825 * 16 14 12 19 19 H 1.48498 * 109.46710 * 329.99771 * 16 14 12 20 20 C 1.47473 * 111.00187 * 169.99488 * 9 8 7 21 21 H 1.08999 * 109.46892 * 269.68908 * 1 2 3 22 22 H 1.09000 * 109.46803 * 29.68082 * 1 2 3 23 23 H 1.09000 * 109.47214 * 149.68875 * 1 2 3 24 24 H 1.07997 * 125.99254 * 180.11750 * 5 3 2 25 25 H 1.09007 * 109.46284 * 30.04700 * 8 7 6 26 26 H 1.08999 * 109.47010 * 150.04062 * 8 7 6 27 27 H 1.08997 * 113.47445 * 336.05793 * 10 9 8 28 28 H 1.08998 * 113.47922 * 106.52481 * 10 9 8 29 29 H 1.09005 * 114.16932 * 272.37149 * 11 10 9 30 30 H 0.97003 * 120.00234 * 179.97438 * 15 14 12 31 31 H 1.08996 * 113.48042 * 253.46831 * 20 9 8 32 32 H 1.09005 * 113.47599 * 23.88184 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 17 1.7698 2.7618 0.0006 5 6 3.5472 0.6496 0.0027 6 7 3.5101 -0.6916 -0.0043 7 6 2.2671 -1.0879 -0.0060 8 6 1.8024 -2.5215 -0.0139 9 7 1.6518 -2.9799 -1.4014 10 6 0.2629 -2.8082 -1.8668 11 6 0.3792 -4.1809 -2.5442 12 6 -0.8539 -5.0388 -2.4249 13 1 -0.9371 -5.7563 -1.6219 14 6 -1.8761 -4.9080 -3.3409 15 7 -1.7751 -4.0340 -4.3185 16 14 -3.4045 -5.9720 -3.1935 17 1 -4.4090 -5.2806 -2.3461 18 1 -3.9748 -6.2089 -4.5439 19 1 -3.0443 -7.2722 -2.5732 20 6 1.4308 -4.4369 -1.4556 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5187 24 1 4.4382 1.2599 0.0052 25 1 2.5370 -3.1442 0.4968 26 1 0.8437 -2.5955 0.4994 27 1 -0.4664 -2.7839 -1.0572 28 1 0.1395 -1.9854 -2.5710 29 1 0.7834 -4.1465 -3.5559 30 1 -2.4941 -3.9422 -4.9632 31 1 2.2971 -4.9946 -1.8114 32 1 1.0140 -4.8475 -0.5359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826985070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:25 Heat of formation + Delta-G solvation = 74.454963 kcal Electronic energy + Delta-G solvation = -16628.529304 eV Core-core repulsion = 13844.616101 eV Total energy + Delta-G solvation = -2783.913203 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.25019 -40.61767 -37.81865 -35.18261 -34.82252 -32.75438 -29.70326 -28.22676 -27.22319 -26.58398 -24.39650 -22.56452 -21.01199 -20.50668 -18.80746 -18.19657 -17.26608 -16.61172 -16.44022 -15.99656 -15.69526 -15.51916 -14.91389 -14.17261 -14.07012 -13.87543 -13.74968 -13.37942 -13.07591 -12.92174 -12.83257 -12.54380 -12.43537 -12.15251 -11.70311 -11.20435 -11.12348 -10.90140 -10.73724 -10.49383 -9.76769 -9.35145 -8.13980 -6.25598 0.52164 0.73289 1.44241 1.46966 1.56446 1.84849 1.92157 2.44086 3.14822 3.21267 3.44346 3.69563 3.85620 4.17917 4.19703 4.24356 4.38362 4.45863 4.46876 4.52617 4.67311 4.81959 4.96249 5.01847 5.20138 5.39144 5.47835 5.64428 5.84255 5.89300 6.26668 6.32817 6.84884 6.89143 7.43809 8.95672 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.004961 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.396993 B = 5642.743755 C = 6161.583513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.449 5.449 3 C 0.003 3.997 4 Cl 0.007 6.993 5 C -0.008 4.008 6 N -0.502 5.502 7 C 0.236 3.764 8 C 0.104 3.896 9 N -0.484 5.484 10 C 0.019 3.981 11 C 0.021 3.979 12 C -0.526 4.526 13 H 0.065 0.935 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.014 3.986 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.200 0.800 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 9.763 11.100 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.134 5.134 3 C -0.138 4.138 4 Cl 0.035 6.965 5 C -0.158 4.158 6 N -0.222 5.222 7 C -0.027 4.027 8 C -0.026 4.026 9 N -0.207 5.207 10 C -0.110 4.110 11 C 0.002 3.998 12 C -0.564 4.564 13 H 0.083 0.917 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.114 4.114 21 H 0.124 0.876 22 H 0.117 0.883 23 H 0.107 0.893 24 H 0.217 0.783 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.273 9.796 10.630 15.074 hybrid contribution -2.192 0.186 0.054 2.201 sum 2.081 9.981 10.684 14.769 Atomic orbital electron populations 1.22479 0.74639 1.05957 1.05569 1.45301 1.08875 1.05275 1.53912 1.21920 0.91303 0.83085 1.17462 1.98364 1.91640 1.08989 1.97496 1.22585 0.95534 0.90787 1.06919 1.70352 1.19304 1.11745 1.20759 1.23124 0.85462 0.90532 1.03567 1.21066 1.01855 0.86904 0.92772 1.68848 1.24849 1.09675 1.17376 1.23939 0.88064 1.00410 0.98612 1.20018 0.93629 0.92759 0.93424 1.21360 1.01748 1.21097 1.12215 0.91700 1.25806 1.01587 0.96322 0.94551 1.70103 1.33958 1.36367 1.15775 0.85586 0.79518 0.79522 0.77223 1.19809 1.21480 1.18900 1.23877 0.98943 0.88678 0.99915 0.87599 0.88324 0.89298 0.78300 0.87068 0.90619 0.91583 0.94144 0.95631 0.92936 0.90747 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.25 10.66 127.77 1.36 2.61 16 2 N -0.45 -12.84 3.16 -526.49 -1.66 -14.50 16 3 C 0.00 0.09 7.49 83.12 0.62 0.71 16 4 Cl 0.01 0.15 28.93 -2.72 -0.08 0.07 16 5 C -0.01 -0.23 11.86 83.55 0.99 0.76 16 6 N -0.50 -17.20 11.25 -187.94 -2.11 -19.32 16 7 C 0.24 7.67 7.49 138.10 1.03 8.71 16 8 C 0.10 3.25 4.95 85.56 0.42 3.67 16 9 N -0.48 -18.61 6.32 -932.52 -5.89 -24.50 16 10 C 0.02 0.79 5.85 83.58 0.49 1.28 16 11 C 0.02 1.01 3.76 -11.20 -0.04 0.97 16 12 C -0.53 -27.06 8.83 25.60 0.23 -26.84 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.02 0.88 5.46 84.65 0.46 1.35 16 15 N -0.92 -52.40 13.26 21.45 0.28 -52.12 16 16 Si 0.96 41.19 29.54 68.60 2.03 43.21 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.01 0.55 7.25 83.58 0.61 1.16 16 21 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.10 2.01 7.91 -2.39 -0.02 1.99 16 23 H 0.09 2.31 5.03 -2.39 -0.01 2.30 16 24 H 0.20 4.45 8.06 -2.91 -0.02 4.42 16 25 H 0.11 3.21 8.08 -2.38 -0.02 3.19 16 26 H 0.08 2.10 6.86 -2.39 -0.02 2.08 16 27 H 0.07 2.61 6.44 -2.39 -0.02 2.60 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.03 1.42 8.11 -2.38 -0.02 1.41 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 2.67 7.87 -2.38 -0.02 2.66 16 Total: -1.00 -61.68 286.28 -0.13 -61.82 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.13 Total: 10.96 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.17 Total: -5.62 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -9.38 Total: -110.44 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -61.68 -0.13 -61.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826985070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.272 kcal (2) G-P(sol) polarization free energy of solvation -61.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds