Wall clock time and date at job start Mon Mar 30 2020 04:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 N 1.46496 * 109.47575 * 239.99149 * 2 1 3 5 5 C 1.34777 * 119.99614 * 84.99689 * 4 2 1 6 6 O 1.21588 * 120.00178 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99964 * 180.02562 * 5 4 2 8 8 C 1.46493 * 119.99864 * 179.73002 * 7 5 4 9 9 C 1.50698 * 109.47082 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99736 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00453 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99720 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00263 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47023 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46863 * 119.99474 * 13 11 9 16 16 H 1.48496 * 109.47155 * 239.99608 * 13 11 9 17 17 C 1.50706 * 109.47023 * 119.99273 * 2 1 3 18 18 C 1.33639 * 122.74977 * 274.73653 * 17 2 1 19 19 S 1.76195 * 107.92363 * 179.97438 * 18 17 2 20 20 C 1.70975 * 90.28346 * 0.27248 * 19 18 17 21 21 N 1.29024 * 110.16655 * 359.84021 * 20 19 18 22 22 H 1.09002 * 109.47400 * 300.00490 * 1 2 3 23 23 H 1.09001 * 109.47056 * 60.01036 * 1 2 3 24 24 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00499 * 265.00266 * 4 2 1 26 26 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 27 27 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 28 28 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 29 29 H 0.96993 * 120.00028 * 180.02562 * 12 11 9 30 30 H 1.08000 * 126.03553 * 0.03371 * 18 17 2 31 31 H 1.07999 * 124.91895 * 179.83770 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1471 -0.0185 -2.3570 6 8 1.8583 1.1613 -2.4117 7 7 2.5960 -0.6541 -3.4576 8 6 2.7302 0.0752 -4.7210 9 6 3.2469 -0.8569 -5.7865 10 1 3.4548 -1.8892 -5.5464 11 6 3.4551 -0.3916 -7.0677 12 7 3.2023 0.8655 -7.3599 13 14 4.0962 -1.5469 -8.3883 14 1 4.2999 -2.8982 -7.8074 15 1 3.1109 -1.6273 -9.4963 16 1 5.3878 -1.0332 -8.9107 17 6 2.0323 -0.7103 1.2306 18 6 2.1858 -0.0964 2.4077 19 16 2.7879 -1.2822 3.5633 20 6 2.7811 -2.4837 2.3469 21 7 2.3622 -1.9861 1.2326 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 2.2491 -1.6319 -1.1524 26 1 2.8260 -1.5954 -3.4140 27 1 1.7574 0.4652 -5.0206 28 1 3.4287 0.9019 -4.5910 29 1 3.3484 1.1927 -8.2612 30 1 1.9767 0.9429 2.6142 31 1 3.0836 -3.5105 2.4904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854025792.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:54 Heat of formation + Delta-G solvation = -14.423090 kcal Electronic energy + Delta-G solvation = -16073.825622 eV Core-core repulsion = 13288.102084 eV Total energy + Delta-G solvation = -2785.723538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40181 -40.40418 -36.62235 -35.84078 -34.39041 -32.42617 -30.18608 -28.90880 -26.57160 -24.96509 -23.80168 -21.76062 -20.64979 -19.76927 -19.21147 -18.02053 -17.14245 -16.63171 -16.49465 -16.29692 -15.71838 -15.40880 -15.00178 -14.48308 -14.26965 -14.12209 -14.01732 -13.64055 -13.21966 -12.87035 -12.75149 -12.64717 -12.21277 -12.18819 -11.43915 -11.22935 -10.80626 -10.64277 -10.42981 -10.30202 -9.79720 -9.57267 -8.27710 -6.43956 -0.21236 0.49132 0.76727 1.43799 1.45560 1.58799 1.71353 1.96189 2.25445 2.40527 3.07114 3.16049 3.57340 3.90810 4.22736 4.25390 4.44366 4.50388 4.67809 4.85049 5.04630 5.10145 5.23004 5.28370 5.50122 5.54388 5.68823 5.86174 6.27964 6.67759 6.75236 7.24951 7.31050 7.72245 8.84977 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.041965 B = 0.003831 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.068427 B = 7307.312033 C = 7727.447222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.234 3.766 3 H 0.086 0.914 4 N -0.725 5.725 5 C 0.693 3.307 6 O -0.645 6.645 7 N -0.724 5.724 8 C 0.286 3.714 9 C -0.555 4.555 10 H 0.082 0.918 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.987 3.013 14 H -0.255 1.255 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.042 3.958 18 C -0.253 4.253 19 S 0.181 5.819 20 C 0.018 3.982 21 N -0.498 5.498 22 H 0.090 0.910 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.410 0.590 26 H 0.403 0.597 27 H -0.013 1.013 28 H -0.014 1.014 29 H 0.269 0.731 30 H 0.197 0.803 31 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -8.510 23.899 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.126 3.874 3 H 0.104 0.896 4 N -0.382 5.382 5 C 0.393 3.607 6 O -0.528 6.528 7 N -0.378 5.378 8 C 0.162 3.838 9 C -0.593 4.593 10 H 0.100 0.900 11 C -0.196 4.196 12 N -0.569 5.569 13 Si 0.810 3.190 14 H -0.178 1.178 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.090 4.090 18 C -0.393 4.393 19 S 0.434 5.566 20 C -0.279 4.279 21 N -0.213 5.213 22 H 0.109 0.891 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.247 0.753 26 H 0.237 0.763 27 H 0.005 0.995 28 H 0.004 0.996 29 H 0.078 0.922 30 H 0.214 0.786 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.251 -7.689 24.308 25.526 hybrid contribution 0.085 -0.364 -1.690 1.731 sum -1.166 -8.052 22.618 24.037 Atomic orbital electron populations 1.22104 0.93359 1.02542 1.02756 1.19223 0.94495 0.94837 0.78836 0.89629 1.44927 1.71529 1.14270 1.07477 1.16264 0.78412 0.84774 0.81244 1.90821 1.59780 1.16594 1.85583 1.45326 1.69158 1.14172 1.09122 1.18424 0.94137 0.91664 0.79528 1.21630 1.45533 0.97405 0.94716 0.90029 1.26067 0.95143 0.97074 1.01273 1.70149 1.48602 1.16606 1.21538 0.85078 0.77676 0.78669 0.77569 1.17815 1.20320 1.20349 1.20159 1.03295 0.89867 0.95716 1.27085 1.09617 1.06655 0.95939 1.83827 1.58233 1.00317 1.14260 1.28943 1.01931 1.06444 0.90621 1.65931 1.14983 1.11885 1.28474 0.89150 0.93601 0.92026 0.75295 0.76258 0.99509 0.99569 0.92210 0.78597 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.47 71.98 0.68 -3.17 16 2 C 0.23 6.72 2.91 44.25 0.13 6.85 16 3 H 0.09 2.71 7.57 -2.39 -0.02 2.69 16 4 N -0.73 -24.52 5.07 -461.40 -2.34 -26.86 16 5 C 0.69 31.05 8.53 179.05 1.53 32.58 16 6 O -0.64 -34.37 16.01 -3.99 -0.06 -34.43 16 7 N -0.72 -33.52 5.55 -482.29 -2.68 -36.20 16 8 C 0.29 16.46 5.43 85.63 0.46 16.92 16 9 C -0.55 -31.27 9.28 25.60 0.24 -31.03 16 10 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 13 Si 0.99 43.25 29.54 68.60 2.03 45.28 16 14 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.04 0.96 5.80 41.52 0.24 1.20 16 18 C -0.25 -4.31 11.14 66.78 0.74 -3.56 16 19 S 0.18 2.13 23.22 -56.49 -1.31 0.81 16 20 C 0.02 0.26 12.23 130.65 1.60 1.86 16 21 N -0.50 -10.98 9.52 -191.55 -1.82 -12.80 16 22 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.41 12.36 7.83 -92.71 -0.73 11.63 16 26 H 0.40 15.85 8.34 -92.71 -0.77 15.08 16 27 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 28 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.23 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -75.49 290.22 -0.15 -75.64 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.33 Total: 23.10 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.08 Total: 22.33 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -6.55 Total: -132.73 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.06 Total: -34.43 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.81 kcal Total: -75.49 -0.15 -75.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025792.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.214 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds