Wall clock time and date at job start Mon Mar 30 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48500 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47215 * 299.99881 * 3 2 1 6 6 H 1.48502 * 109.47219 * 60.00153 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 C 1.52997 * 109.47266 * 180.02562 * 19 17 10 21 21 F 1.39897 * 109.46874 * 179.97438 * 20 19 17 22 22 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 24 24 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 25 25 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 26 26 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 27 27 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 28 28 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 29 29 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 30 30 H 1.09004 * 109.46469 * 300.00239 * 19 17 10 31 31 H 1.09002 * 109.46873 * 59.99721 * 19 17 10 32 32 H 1.09006 * 109.46912 * 299.99482 * 20 19 17 33 33 H 1.09002 * 109.47551 * 59.99954 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 2.2448 -3.6633 -2.2193 19 6 3.6197 -5.2696 -1.1707 20 6 3.9504 -5.6562 -2.6136 21 9 4.8603 -6.7188 -2.6147 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 1.9070 -4.0565 2.0267 26 1 2.9081 -5.2278 1.1354 27 1 3.1101 -1.8196 2.8955 28 1 5.7113 -1.1555 3.1926 29 1 7.1120 -2.9227 1.8578 30 1 4.5326 -4.9672 -0.6576 31 1 3.1800 -6.1244 -0.6567 32 1 3.0376 -5.9585 -3.1271 33 1 4.3902 -4.8013 -3.1273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900454497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:19 Heat of formation + Delta-G solvation = -74.814902 kcal Electronic energy + Delta-G solvation = -19262.877633 eV Core-core repulsion = 16011.862476 eV Total energy + Delta-G solvation = -3251.015156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.47672 -42.14629 -39.13696 -35.34201 -32.86159 -32.56090 -31.64388 -30.04834 -27.52779 -25.42916 -24.12851 -22.11024 -21.32485 -20.35595 -18.62299 -17.26598 -16.88157 -16.44951 -16.12497 -15.65379 -15.45555 -14.77135 -14.64872 -14.54004 -13.92615 -13.80284 -12.94734 -12.49503 -12.45023 -12.38969 -12.24655 -11.89128 -11.53726 -11.35021 -11.00655 -10.93155 -10.64559 -10.61006 -10.24113 -9.71412 -9.42699 -9.10211 -8.46760 -8.16471 -7.82506 -6.07090 -4.09781 2.06674 3.00641 3.18675 3.27498 3.35837 3.40329 3.45213 3.82752 4.43064 4.79914 4.85552 4.99787 5.03872 5.20496 5.27461 5.30045 5.44429 5.54221 5.69858 5.75578 5.83967 6.13464 6.20456 6.41252 6.47051 6.88889 6.94330 7.33056 7.40693 7.54150 7.90030 8.18813 8.20967 8.80750 8.98093 9.54881 11.01491 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.008500 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.533054 B = 3293.370332 C = 4271.209141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.244 3.756 10 N -0.593 5.593 11 C 0.195 3.805 12 C -0.032 4.032 13 C -0.168 4.168 14 C -0.214 4.214 15 C -0.053 4.053 16 O -0.181 6.181 17 C 0.514 3.486 18 O -0.536 6.536 19 C -0.179 4.179 20 C 0.077 3.923 21 F -0.223 7.223 22 H 0.262 0.738 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.195 0.805 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 -9.516 4.591 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.125 3.875 10 N -0.324 5.324 11 C 0.070 3.930 12 C -0.082 4.082 13 C -0.188 4.188 14 C -0.233 4.233 15 C -0.120 4.120 16 O -0.077 6.077 17 C 0.301 3.699 18 O -0.413 6.413 19 C -0.219 4.219 20 C 0.022 3.978 21 F -0.204 7.204 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.127 0.873 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.212 0.788 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.103 -9.411 3.845 13.000 hybrid contribution 0.658 1.425 0.315 1.601 sum 8.761 -7.986 4.161 12.563 Atomic orbital electron populations 1.69937 1.05920 1.26838 1.50851 1.24895 0.94798 0.99082 0.95248 0.86508 0.80183 0.83648 0.77562 1.19787 1.20980 1.20993 1.21433 0.93458 0.90294 1.50342 0.92218 1.19400 0.87200 0.82235 0.98648 1.48348 1.44969 1.35671 1.03446 1.19847 0.89447 0.95486 0.88184 1.22948 0.83890 0.99952 1.01453 1.21615 0.97378 0.97182 1.02672 1.21823 0.93917 1.02146 1.05418 1.23849 0.95517 0.92325 1.00348 1.83949 1.15960 1.47467 1.60357 1.20070 0.81806 0.83769 0.84283 1.90695 1.57965 1.61939 1.30731 1.22303 1.01417 0.99226 0.98960 1.21672 0.91998 0.87354 0.96768 1.92734 1.70161 1.59825 1.97693 0.92831 0.93541 0.94777 0.87298 0.89904 0.83192 0.84033 0.78784 0.87882 0.88438 0.89966 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.10 9.14 -34.44 -0.31 -14.42 16 8 H 0.06 1.69 7.65 -52.49 -0.40 1.28 16 9 C 0.24 6.05 5.20 -5.20 -0.03 6.02 16 10 N -0.59 -11.91 2.44 -176.43 -0.43 -12.34 16 11 C 0.19 3.03 5.78 -5.19 -0.03 3.00 16 12 C -0.03 -0.53 6.85 -35.62 -0.24 -0.77 16 13 C -0.17 -2.93 10.40 -39.70 -0.41 -3.34 16 14 C -0.21 -3.30 10.91 -39.71 -0.43 -3.74 16 15 C -0.05 -0.74 12.09 29.41 0.36 -0.39 16 16 O -0.18 -2.89 9.55 5.68 0.05 -2.84 16 17 C 0.51 10.25 7.67 -10.99 -0.08 10.16 16 18 O -0.54 -12.87 15.56 5.55 0.09 -12.78 16 19 C -0.18 -2.66 4.71 -27.88 -0.13 -2.79 16 20 C 0.08 1.11 6.84 37.16 0.25 1.37 16 21 F -0.22 -3.24 17.36 2.25 0.04 -3.20 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 24 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 25 H 0.11 1.52 7.89 -51.93 -0.41 1.11 16 26 H 0.08 1.01 6.44 -51.93 -0.33 0.67 16 27 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 28 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.20 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.10 1.53 6.93 -51.93 -0.36 1.17 16 31 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 32 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -32.49 294.42 -5.19 -37.68 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.93 Total: 0.80 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.17 Total: -3.28 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.31 Total: -37.62 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.14 Total: -15.62 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.49 -5.19 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900454497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.132 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds