Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47121 * 240.00392 * 2 1 3 5 5 H 1.07999 * 120.00042 * 245.37391 * 4 2 1 6 6 C 1.37880 * 120.00068 * 65.36882 * 4 2 1 7 7 N 1.31515 * 120.00112 * 184.89539 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 5.17178 * 6 4 2 9 9 H 1.48497 * 109.47063 * 269.72393 * 8 6 4 10 10 H 1.48497 * 109.46898 * 29.72148 * 8 6 4 11 11 H 1.48504 * 109.47060 * 149.72096 * 8 6 4 12 12 N 1.46499 * 109.47326 * 120.00156 * 2 1 3 13 13 N 1.40098 * 120.00069 * 270.00261 * 12 2 1 14 14 C 1.29999 * 119.99879 * 179.97438 * 13 12 2 15 15 C 1.46752 * 120.00041 * 179.97438 * 14 13 12 16 16 N 1.30558 * 125.48482 * 179.97438 * 15 14 13 17 17 C 1.31291 * 116.96311 * 180.02562 * 16 15 14 18 18 C 1.50692 * 122.06296 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47402 * 179.97438 * 18 17 16 20 20 C 1.33730 * 115.87504 * 0.02562 * 17 16 15 21 21 S 1.76172 * 125.48381 * 359.69696 * 15 14 13 22 22 H 1.09000 * 109.47026 * 294.97019 * 1 2 3 23 23 H 1.08998 * 109.47329 * 54.96531 * 1 2 3 24 24 H 1.08997 * 109.46920 * 174.97052 * 1 2 3 25 25 H 0.97004 * 119.99708 * 355.27209 * 7 6 4 26 26 H 0.96999 * 119.99395 * 89.99351 * 12 2 1 27 27 H 1.08005 * 120.00240 * 359.97438 * 14 13 12 28 28 H 1.09002 * 109.47186 * 299.98159 * 18 17 16 29 29 H 1.08997 * 109.46894 * 59.97630 * 18 17 16 30 30 H 0.96698 * 114.00248 * 180.02562 * 19 18 17 31 31 H 1.08005 * 125.86457 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6362 -1.1338 6 6 1.7929 -0.1782 -2.4797 7 7 2.1460 -0.8447 -3.5571 8 14 0.9741 1.4930 -2.6418 9 1 -0.4987 1.3176 -2.7139 10 1 1.3160 2.3282 -1.4625 11 1 1.4541 2.1616 -3.8779 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0298 2.3748 14 6 2.6848 -0.5831 3.4363 15 6 2.9299 0.1716 4.6707 16 7 3.3623 -0.3332 5.7945 17 6 3.5227 0.4982 6.7979 18 6 4.0161 0.0395 8.1458 19 8 4.0906 1.1582 9.0318 20 6 3.2212 1.7773 6.5499 21 16 2.6946 1.9058 4.8729 22 1 -0.3633 0.4338 0.9316 23 1 -0.3634 0.5899 -0.8414 24 1 -0.3633 -1.0237 -0.0901 25 1 2.6358 -1.6777 -3.4732 26 1 2.1800 -1.6468 1.1720 27 1 2.8641 -1.6479 3.4097 28 1 3.3271 -0.7008 8.5523 29 1 5.0054 -0.4053 8.0384 30 1 4.4020 0.9364 9.9200 31 1 3.2927 2.5924 7.2549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905456899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = 38.032558 kcal Electronic energy + Delta-G solvation = -15579.494316 eV Core-core repulsion = 12796.045425 eV Total energy + Delta-G solvation = -2783.448891 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69244 -37.07267 -36.66997 -34.32063 -32.03844 -30.73320 -28.27840 -27.14849 -25.10088 -24.32972 -21.01059 -20.35556 -19.33680 -18.34504 -17.82952 -16.84217 -16.06762 -15.72079 -15.55027 -14.92669 -14.12282 -13.94530 -13.46747 -12.90511 -12.89977 -12.77631 -12.55308 -12.03768 -11.70477 -11.28961 -11.11168 -10.64435 -10.55667 -10.22836 -10.04770 -9.82796 -9.56657 -9.39604 -8.94240 -8.75005 -8.62321 -7.25110 -6.61147 -4.31800 0.52070 1.44234 1.87500 2.28286 3.09407 3.23653 3.29235 3.37123 3.50551 3.72587 4.33887 4.71021 4.96428 5.12055 5.13833 5.20994 5.39033 5.55258 5.74434 6.11592 6.15939 6.31229 6.43318 6.51409 6.82560 7.21296 7.26367 7.66404 7.75582 7.76384 8.18201 8.69056 8.85618 9.39479 10.77628 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.051142 B = 0.003832 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.366457 B = 7304.429252 C = 7594.542281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.266 3.734 3 H 0.046 0.954 4 C -0.610 4.610 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.903 5.903 8 Si 1.053 2.947 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.597 5.597 13 N -0.179 5.179 14 C 0.017 3.983 15 C 0.158 3.842 16 N -0.473 5.473 17 C 0.058 3.942 18 C 0.156 3.844 19 O -0.571 6.571 20 C -0.243 4.243 21 S 0.117 5.883 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.269 0.731 26 H 0.379 0.621 27 H 0.130 0.870 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.387 0.613 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 3.430 21.046 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.650 4.650 5 H 0.080 0.920 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.882 3.118 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.334 5.334 13 N 0.003 4.997 14 C -0.193 4.193 15 C -0.117 4.117 16 N -0.192 5.192 17 C -0.076 4.076 18 C 0.075 3.925 19 O -0.376 6.376 20 C -0.384 4.384 21 S 0.371 5.629 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.216 0.784 27 H 0.147 0.853 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.281 6.073 18.210 19.198 hybrid contribution 1.354 -3.026 2.535 4.173 sum 1.635 3.047 20.745 21.031 Atomic orbital electron populations 1.22541 0.99377 1.01173 0.99166 1.19143 0.89748 0.94493 0.80369 0.93673 1.22170 1.40978 1.10971 0.90835 0.91970 1.25736 0.96242 1.03611 0.91392 1.70824 1.35890 1.16788 1.30110 0.83886 0.76440 0.75319 0.76151 1.20700 1.20088 1.21278 1.48841 1.70574 1.08261 1.05754 1.73911 1.03418 1.28300 0.94076 1.22139 1.10777 0.97100 0.89286 1.24951 1.00179 0.92374 0.94215 1.66254 1.17678 1.36662 0.98618 1.19578 1.03377 0.89319 0.95307 1.20165 0.99902 0.87162 0.85235 1.86377 1.90433 1.34910 1.25913 1.26751 1.10358 1.01686 0.99628 1.85338 1.61864 1.10024 1.05717 0.94794 0.92939 0.92983 0.92034 0.78359 0.85340 0.91600 0.91578 0.76561 0.80332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.11 37.16 0.34 -3.14 16 2 C 0.27 6.19 2.81 -69.08 -0.19 5.99 16 3 H 0.05 1.10 6.64 -51.93 -0.34 0.76 16 4 C -0.61 -16.33 9.10 -34.44 -0.31 -16.64 16 5 H 0.06 1.77 8.00 -52.49 -0.42 1.35 16 6 C 0.04 1.00 5.43 -17.82 -0.10 0.91 16 7 N -0.90 -26.74 13.70 55.43 0.76 -25.98 16 8 Si 1.05 24.42 25.28 -169.99 -4.30 20.12 16 9 H -0.28 -6.13 6.82 56.52 0.39 -5.75 16 10 H -0.28 -5.99 6.35 56.52 0.36 -5.63 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.60 -12.33 6.10 -5.88 -0.04 -12.36 16 13 N -0.18 -3.41 11.27 32.02 0.36 -3.05 16 14 C 0.02 0.28 11.05 -14.89 -0.16 0.12 16 15 C 0.16 2.52 7.49 -14.65 -0.11 2.41 16 16 N -0.47 -7.24 10.57 -7.82 -0.08 -7.32 16 17 C 0.06 0.77 6.69 -84.41 -0.56 0.21 16 18 C 0.16 1.49 7.64 36.00 0.28 1.76 16 19 O -0.57 -4.75 12.51 -35.23 -0.44 -5.19 16 20 C -0.24 -3.16 10.52 29.15 0.31 -2.85 16 21 S 0.12 1.68 23.20 -107.50 -2.49 -0.82 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 1.11 4.41 -51.93 -0.23 0.88 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.27 7.93 8.72 -40.82 -0.36 7.58 16 26 H 0.38 7.33 8.57 -182.60 -1.56 5.76 16 27 H 0.13 1.94 8.03 -52.48 -0.42 1.52 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.39 1.18 9.12 45.56 0.42 1.59 16 31 H 0.18 2.02 7.51 -52.48 -0.39 1.62 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -30.63 286.30 -6.30 -36.93 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.86 Total: 4.59 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.52 Total: -11.23 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 1.00 Total: -48.72 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.44 Total: -5.19 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -4.30 Total: 20.12 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.63 -6.30 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905456899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.963 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds